数字农科院2.0

Genome-wide signatures of the geographic expansion and breeding of soybean

文献类型： 外文期刊

作者： Li, Ying-Hui;Qin, Chao;Wang, Li;Jiao, Chengzhi;Hong, Huilong;Tian, Yu;Li, Yanfei;Xing, Guangnan;Wang, Jun;Gu, Yongzhe;Gao, Xingpeng;Li, Delin;Li, Hongyu;Liu, Zhangxiong;Jing, Xin;Feng, Beibei;Zhao, Tao;Guan, Rongxia;Guo, Yong;Liu, Jun

作者机构：

关键词： （3-0-2）soybean;adaptation;introgression;flowering time;breeding

期刊名称： SCIENCE CHINA-LIFE SCIENCES

ISSN： 1674-7305

年卷期： 2024 年

页码：

收录情况： SCIE（2024版） ; ; CSCD（2023-2024年度） ; ; 科技核心（2024版）

摘要： Soybean is a leguminous crop that provides oil and protein. Exploring the genomic signatures of soybean evolution is crucial for breeding varieties with improved adaptability to environmental extremes. We analyzed the genome sequences of 2,214 soybeans and proposed a soybean evolutionary route, i.e., the expansion of annual wild soybean (Glycine soja Sieb. & Zucc.) from southern China and its domestication in central China, followed by the expansion and local breeding selection of its landraces (G. max (L.) Merr.). We observed that the genetic introgression in soybean landraces was mostly derived from sympatric rather than allopatric wild populations during the geographic expansion. Soybean expansion and breeding were accompanied by the positive selection of flowering time genes, including GmSPA3c. Our study sheds light on the evolutionary history of soybean and provides valuable genetic resources for its future breeding.

分类号：

  • 相关文献

[1]Genome-wide signatures of the geographic expansion and breeding of soybean. Li, Ying-Hui,Qin, Chao,Wang, Li,Jiao, Chengzhi,Hong, Huilong,Tian, Yu,Li, Yanfei,Xing, Guangnan,Wang, Jun,Gu, Yongzhe,Gao, Xingpeng,Li, Delin,Li, Hongyu,Liu, Zhangxiong,Jing, Xin,Feng, Beibei,Zhao, Tao,Guan, Rongxia,Guo, Yong,Liu, Jun. 2022

[2]Genome-wide selection and introgression of Chinese rice varieties during breeding. Ge, Jinyue,Wang, Junrui,Pang, Hongbo,Li, Fei,Lou, Danjing,Fan, Weiya,Liu, Ziran,Li, Jiaqi,Li, Danting,Nong, Baoxuan,Zhang, Zongqiong,Wang, Yanyan,Huang, Jingfen,Xing, Meng,Nie, Yamin,Xiao, Xiaorong,Zhang, Fan,Wang, Wensheng,Xu, Jianlong. 2022

[3]Introgression and selection shaping the genome and adaptive loci of weedy rice in northern China. Sun, Jian,Ma, Dian-Rong,Xu, Zheng-Jin,Liu, Dan,Du, Hong-Bo,Chen, Wen-Fu,Sun, Jian,Ma, Dian-Rong,Xu, Zheng-Jin,Liu, Dan,Du, Hong-Bo,Chen, Wen-Fu,Qian, Qian.

[4]Introgression from Gossypium hirsutum is a driver for population divergence and genetic diversity in Gossypium barbadense. Wang, Pengpeng,Dong, Na,Wang, Maojun,Sun, Gaofei,Jia, Yinhua,Geng, Xiaoli,Liu, Min,Wang, Weipeng,Pan, Zhaoe,Yang, Qiuyue,Li, Hongge,Wei, Chunyan,Wang, Liru,Zheng, Hongkun,He, Shoupu,Zhang, Xianlong,Wang, Qinglian,Du, Xiongming. 2022

[5]OsCOL16, encoding a CONSTANS-like protein, represses flowering by up regulating Ghd7 expression in rice. Wu, Weixun,Chen, Daibo,Zhang, Yingxin,Sun, Limping,Yang, Zhengfu,Zhao, Chunde,Zhan, Xiaodeng,Shen, Xihong,Yu, Ping,Fu, Yaping,Cao, Liyong,Cheng, Shihua,Wu, Weixun,Chen, Daibo,Zhang, Yingxin,Sun, Limping,Yang, Zhengfu,Zhao, Chunde,Zhan, Xiaodeng,Shen, Xihong,Yu, Ping,Fu, Yaping,Cao, Liyong,Cheng, Shihua,Zheng, Xiao-Ming,Ma, Weiwei,Zhang, Huan,Zhu, Shanshan.

[6]Evolution of the PEBP gene family and selective signature on FT-like clade. Xiao-Ming Zheng, Fu-Qing Wu, Xin Zhang, Qi-Bing Lin, Jie Wang, Xiu-Ping Guo, Cai-Lin Lei, Zhi-Jun Cheng, Cheng Zou, Jian-Min Wan. 2016

[7]Population genomics of Zea species identifies selection signatures during maize domestication and adaptation. Gen Xu,Xuan Zhang,Wenkang Chen,Renyu Zhang,Zhi Li,Weiwei Wen,Marilyn L. Warburton,Jiansheng Li,Huihui Li,Xiaohong Yang. 2022

[8]GmFT3a fine-tunes flowering time and improves adaptation of soybean to higher latitudes. Shan Yuan,Yining Wang,Junya Wang,Chunlei Zhang,Lixin Zhang,Bingjun Jiang,Tingting Wu,Li Chen,Xin Xu,Yupeng Cai,Shi Sun,Fulu Chen,Wenwen Song,Cunxiang Wu,Wensheng Hou,Lijie Yu,Tianfu Han. 2022

[9]Natural variation of domestication-related genes contributed to latitudinal expansion and adaptation in soybean. Jing Li,Yecheng Li,Kwadwo Gyapong Agyenim-Boateng,Abdulwahab Saliu Shaibu,Yitian Liu,Yue Feng,Jie Qi,Bin Li,Shengrui Zhang,Junming Sun. 2024

[10]早熟西瓜新品种锦辉的选育. 谭慧明,杜晓莉,孙德玺,焦书升. 2009

[11]蔬菜育种的基因组学. 黄三文. 2012

[12]DissectingthemaizedirectandindirectdefenseresponseagainstAsianCornBorer. 汪海,李圣彦,查象敏,朱莉,黄大昉,郎志宏. 2015

[13]GeneticAnalysisofNotchedGraininRice水稻腹缺米的遗传分析. 熊振民,闵绍楷,孔繁林,朱旭东. 1986

[14]中国农业的植物突变育种与同位素示踪应用(英文). 梁劬. 1993

[15]Synchronous evidence from both phenotypic and molecular signatures for the natural occurrence of sympatric hybridization between cultivated soybean (Glycine max) and its wild progenitor (G-soja). Wang, Ke-Jing,Li, Xiang-Hua. 2014

[16]Genome-wide multilocus analysis of intraspecific differentiation in Oryza rufipogon Griff. from China and the influence of introgression from O. sativa L.. Li, F.,Pei, X. W.,Jia, S. R.,Wang, F.,Yuan, Q. H.,Wu, H. J.,Peng, Y. F.. 2013

[17]Linked vs. unlinked markers: multilocus microsatellite haplotype-sharing as a tool to estimate gene flow and introgression. Koopman, Wim J. M.,Li, Yinghui,Coart, Els,De Weg, Eric Van,Vosman, Ben,Roldan-Ruiz, Isabel,Smulders, Marinus J. M..

[18]Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci. Li, Ying-Hui,Li, Wei,Zhang, Chen,Chang, Ru-Zhen,Qiu, Li-Juan,Yang, Liang,Gaut, Brandon S..

[19]Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Smykal, Petr,Coyne, Clarice J.,Hu, Jinguo,Ambrose, Mike J.,Maxted, Nigel,Schaefer, Hanno,Blair, Matthew W.,Berger, Jens,Greene, Stephanie L.,Nelson, Matthew N.,Besharat, Naghmeh,Varshney, Rajeev K.,Nelson, Matthew N.,Besharat, Naghmeh,Varshney, Rajeev K.,Vymyslicky, Tomas,Toker, Cengiz,Saxena, Rachit K.,Roorkiwal, Manish,Pandey, Manish K.,Varshney, Rajeev K.,Li, Ying H.,Wang, Li X.,Guo, Yong,Qiu, Li J.,Redden, Robert J..

[20]Fine-scale phylogenetic structure and major events in the history of the current wild soybean (glycine soja) and taxonomic assignment of semi-wild type (glycine gracilis skvortz.) within the chinese subgenus soja. Wang, Ke-Jing,Li, Xiang-Hua,Liu, Yang.

作者其他论文 更多>>