Multifactorial and multiplexed epigenomic profiling of five DNA modifications in plants with mDIP-seq
文献类型: 外文期刊
作者: Jianli Yan; Jiaojiao Ji; Changbin Sun; Wei Xu
关键词: N/A
期刊名称: Science China-Life Sciences
ISSN: 1674-7305
年卷期: 2025 年
页码:
收录情况: SCIE(2025版) ; ; CSCD(2025-2026年度) ; ; 科技核心(2024版)
摘要: Several next-generation genomic sequencing (NGS) methods have been developed for mapping DNA modifications, such as BS-seq for 5mC. However, these methods are typically designed to detect a single modification in a single sample per experiment, which significantly limits their utility in constructing comprehensive multiplex and multifactorial modification atlases, and has led to a relative paucity of research on non-5mC modifications in plants. In this study, we developed mDIP-seq (multiplex DNA immunoprecipitation followed by sequencing), a novel DNA modification profiling technique that facilitates high-throughput and cost-effective mapping of multiple DNA modifications. mDIP-seq integrated DNA immunoprecipitation method with the single-stranded DNA (ssDNA) barcoding technique that we previously developed, which enabled strand-specific mapping of DNA modifications.
分类号:
- 相关文献
作者其他论文 更多>>
-
Ecological drivers and functional roles of phage communities in the Yangtze River’s freshwater ecosystems
作者:Liang Peng; Fengxia Yang; Jing Zhang; Jiayu Shang; Wei Xu; Shoushan Sheng; Qinfen Li; Yukun Zou; Zhengfu Yue
关键词:Yangtze River; Phage; Functional genes; Virus-host interactions; Elevation
-
mDRIP-seq is a high-throughput method for quantitative profiling of R-loop landscape
作者:Changbin Sun; Zhenzhen Wang; Qin Li; Qianwen Sun; Wei Xu
关键词:N/A
-
The chromosome-level genome of female ginseng (Angelica sinensis) provides insights into molecular mechanisms and evolution of coumarin biosynthesis
作者:Xiaoxu Han; Cheng Li; Shichao Sun; Jiaojiao Ji; Bao Nie; Garth Maker; Yonglin Ren and Li Wang
关键词:Angelica sinensis; chromosome-level genome; whole-genome duplication; simple coumarin; furanocoumarin; prenyltransferase.