数字农科院2.0

Construction of a high-density genetic map and QTL mapping of growth traits in kiwifruit

文献类型： 外文期刊

作者： Li, Sikai;Wang, Ran;Lin, Miaomiao;Gu, Hong;Li, Yukuo;Zhang, Min;Feng, Xin;Qi, Xiujuan

作者机构：

关键词： Kiwifruit;Trunk diameter;Annual branch diameter;Single nucleotide polymorphism;Genetic map;QTL;Molecular marker

期刊名称： SCIENTIA HORTICULTURAE

ISSN： 0304-4238

年卷期： 2025 年 339 卷

页码：

收录情况： SCIE（2025版）

摘要： The trunk diameter (TD) and annual branch diameter (ABD) are closely associated with the growth vigor, abiotic resistance and fruit yield of kiwifruit. These traits are quantitative traits that are controlled by more than one quantitative trait loci (QTLs). However, QTLs for TD and ABD in kiwifruit remain unelucidated. In this study, we generated a cross of the diploid species Actinidia chinensis 'Hongyang' (female) x 'Boshanbiyu' (male) and performed restriction-site associated DNA sequencing on the parents and 173 F1 progeny to identify single-nucleotide polymorphisms (SNPs) in the population. A high-density linkage map spanning 2,548.97 cM was developed using 6,506 bin markers. This bin map consisted of 29 linkage group (LG), with an average genetic distance of 0.39 cM. A total of 8 QTLs were identified: four for TD and four for ABD, with the variance explained by these QTLs ranging from 4.43 % to 16.11 %. A total of 358 TD genes and 181 ABD genes were extracted from the mapped QTLs, and analyzed by KEGG enrichment. In addition, we developed a TD marker from LG23 and an ABD marker from LG10 which were significantly correlated with growth traits. The TD marker is associated with Actinidia22292, a gene involved in protein polar localization, while the ABD marker is linked to Actinidia40478, an Ein3-binding F-box protein. The two SNP markers developed in this study were further validated in a biparental population, indicating their potential use in predicting seedling growth vigor. In summary, these genetic findings deepen our understanding of the genetic basis of growth traits in kiwifruit, and provide valuable information to facilitate kiwifruit breeding.

分类号：

  • 相关文献

[1]Construction of a high-density SNP genetic map in fluecured tobacco based on SLAF-seq. Gong, Daping,Xu, Xiuhong,Wang, Chuanyi,Ren, Min,Wang, Chunkai,Chen, Mingli,Huang, Long,Xu, Xiuhong,Wang, Chunkai,Wang, Chunkai.

[2]A major quantitative trait locus conferring resistance to fusarium wilt was detected in cucumber by using recombinant inbred lines. Zhang, Sheng-ping,Miao, Han,Yang, Yu-hong,Xie, Bing-yan,Wang, Ye,Gu, Xing-fang.

[3]Detection of quantitative trait loci (QTL) associated with spring regrowth in alfalfa (Medicago sativa L.). Xue qian JIANG,Fan ZHANG,Zhen WANG,Rui cai LONG,Ming na LI,Fei HE,Xi jiang YANG,Chang fu YANG,Xu JIANG,Qing chuan YANG,Quan zhen WANG,Jun mei KANG. 2022

[4]RAD-Seq-Based High-Density Linkage Maps Construction and Quantitative Trait Loci Mapping of Flowering Time Trait in Alfalfa (Medicago sativa L.). Jiang, Xueqian,Yang, Tianhui,Zhang, Fan,Yang, Xijiang,Yang, Changfu,He, Fei,Long, Ruicai,Gao, Ting,Jiang, Yiwei,Yang, Qingchuan,Wang, Zhen,Kang, Junmei. 2022

[5]Construction of a high-density adzuki bean genetic map and evaluation of its utility based on a QTL analysis of seed size. Li-xia WANG,Jie WANG,Gao-ling LUO,Xing-xing YUAN,Dan GONG,Liang-liang HU,Suhua WANG,Hong-lin CHEN,Xin CHEN,Xu-zhen CHENG. 2021

[6]High-density genetic map construction and QTL mapping of a zigzag-shaped stem trait in tea plant (Camellia sinensis). Dingding Liu,Yuanyuan Ye,Rongjin Tang,Yang Gong,Si Chen,Chenyu Zhang,Piao Mei,Jiedan Chen,Liang Chen,Chunlei Ma. 2024

[7]Integrating machine learning to elucidate the genetic basis of 30 traits in G. barbadense BMC79 cultivar with superior fiber properties. Na Dong,Junshuai Chen,Mao Chai,Jiapeng Han,Weipeng Wang,Song Yang,Peipei Zhang,Baohong Zhang,Qinglian Wang,Qinghua Yang. 2025

[8]A intervarietal genetic map and QTL analysis for yield traits in wheat. Li, Sishen,Jia, Jizeng,Wei, Xianyun,Zhang, Xiaocun,Li, Linzhi,Chen, Haimei,Fan, Yuding,Sun, Haiyan,Zhao, Xinhua,Lei, Tiandong,Xu, Yunfong,Jiang, Fangshan,Wang, Honggang,Li, Lihui. 2007

[9]Genome-Wide Linkage Mapping of QTL for Yield Components, Plant Height and Yield-Related Physiological Traits in the Chinese Wheat Cross Zhou 8425B/Chinese Spring. Gao, Fengmei,Wu, Xiaoxia,Gao, Fengmei,Wen, Weie,Liu, Jindong,Rasheed, Awais,Xia, Xianchun,He, Zhonghu,Gao, Fengmei,Rasheed, Awais,He, Zhonghu,Yin, Guihong. 2015

[10]Genome-Wide Single-Nucleotide Polymorphisms Discovery and High-Density Genetic Map Construction in Cauliflower Using Specific-Locus Amplified Fragment Sequencing. Zhao, Zhending,Gu, Honghui,Sheng, Xiaoguang,Yu, Huifang,Wang, Jiansheng,Huang, Long,Wang, Dan. 2016

[11]A genetic linkage map of hexaploid naked oat constructed with SSR markers. Song, Gaoyuan,Huo, Pengjie,Wu, Bin,Zhang, Zongwen,Zhang, Zongwen. 2015

[12]Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps. Sharma, Sanjeev Kumar,McLean, Karen,Waugh, Robbie,Bryan, Glenn J.,Bolser, Daniel,Martin, David Michael Alan,de Boer, Jan,Visser, Richard G. F.,Bachem, Christian W. B.,Sonderkaer, Mads,Amoros, Walter,Munive, Susan,Simon, Reinhard,Bonierbale, Merideth,Carboni, Martin Federico,Feingold, Sergio E.,D'Ambrosio, Juan Martin,de la Cruz, German,Di Genova, Alex,Maass, Alejandro,Di Genova, Alex,Maass, Alejandro,Douches, David S.,Hamilton, John P.,Eguiluz, Maria,Guzman, Frank,Lozano, Roberto,Martinez, Diana,Ponce, Olga,Ramirez, Manuel,Torres, Yerisf,Orjeda, Gisella,Guo, Xiao,Li, Guangcun,Hackett, Christine A.,Li, Ying,Thomson, Susan J.,Zhang, Zhonghua,Huang, Sanwen,Mejia, Nilo,Nagy, Istvan,Milbourne, Dan,Jacobs, Jeanne M. E.,Jacobs, Jeanne M. E.,Veilleux, Richard E.. 2013

[13]Fine mapping of the rice bacterial blight resistance gene Xa-4 and its co-segregation marker. Wang, WM,Zhou, YL,Jiang, GH,Ma, BJ,Chen, XW,Zhang, Q,Zhu, LH,Zhai, WX.

[14]A high-density genetic map for P genome of Agropyron Gaertn. based on specific-locus amplified fragment sequencing (SLAF-seq). Zhang, Yan,Zhang, Jinpeng,Gao, Ainong,Zhang, Jing,Yang, Xinming,Liu, Weihua,Li, Xiuquan,Li, Lihui,Zhang, Yan,Huang, Long.

[15]Construction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.). Chen, Hui,Song, Yue,Li, Lei-Ting,Wu, Jun,Zhang, Shao-Ling,Khan, M. Awais,Korban, Schuyler S.,Li, Xiu-Gen,Korban, Schuyler S..

[16]A Genetic Linkage Map of Kenaf (Hibiscus cannabinus L.) Based on SRAP, ISSR and RAPD Markers. Zhang Guang-qing,Qi Jian-min,Zhang Xiao-chen,Fnag Ping-ping,Tao Ai-fen,Lan Tao,Wu Wei-ren,Zhang Guang-qing,Qi Jian-min,Wu Wei-ren,Su Jian-guang,Liu Ai-min,Liu Ai-min. 2011

[17]Improved Reconstruction And Comparative Analysis Of Chromosome 12 To Rectify Mis-Assemblies Ingossypium Arboreum. Zhang, Youping,Wang, Qiaolian,Abid, Muhammad Ali,Cheng, Hailiang,Malik, Waqas,Cheng, Hailiang,Ashraf, Javaria,Yang, Qiuhong,Zuo, Dongyun,Song, Guoli,Yu, John Z.,Ashraf, Javaria,Feng, Xiaoxu,Zuo, Dongyun,Song, Guoli,Feng, Xiaoxu,Zhang, Youping,Wang, Qiaolian. 2020

[18]Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Wang, Long,Wu, Jun,Yin, Hao,Zhang, Shaoling,Wang, Long,Li, Xiugen,Wang, Lei,Xue, Huabai.

[19]Construction of a high-density linkage map and mapping quantitative trait loci for somatic embryogenesis using leaf petioles as explants in upland cotton (Gossypium hirsutum L.). Zhenzhen Xu,Chaojun Zhang,Xiaoyang Ge,Ni Wang,Kehai Zhou,Xiaojie Yang,Zhixia Wu,Xueyan Zhang,Chuanliang Liu,Zuoren Yang,Changfeng Li,Kun Liu,Zhaoen Yang,Yuyuan Qian,Fuguang Li.

[20]Genome Wide SSR High Density Genetic Map Construction from an Interspecific Cross of Gossypium hirsutum X Gossypium tomentosum. Muhammad K.R.Khan,Haodong Chen,Zhongli Zhou,Muhammad K.Ilyas,Xingxing Wang,Xiaoyan Cai,Chunying Wang,Fang Liu,Kunbo Wang. 2016

作者其他论文 更多>>