A chromosome-level genome assembly of Verticillium albo-atrum, an dangerous quarantine pathogen known for causing verticillium wilt
文献类型: 外文期刊
作者: Yang Chen;Yunfang Chen;Yanfeng Deng;Zhenchuan Mao;Yan Li;Jianlong Zhao;Guohua Chen;Jian Ling
作者机构:
关键词: Genome assembly;Hi-C chromatin contact information;Verticillium albo-atrum
期刊名称: BMC Genomic Data
ISSN: 2730-6844
年卷期: 2025 年 26 卷 1 期
页码:
收录情况: SCIE(2025版)
摘要: Objectives: Verticillium albo-atrum is one of the most dangerous quarantine pathogen, which is a soil-borne pathogen known for causing verticillium wilt, a disease that affects a wide range of plants, including many economically important crops. However, the lack of high-quality genome resource has greatly limited the research of molecular and evolutionary mechanisms of Verticillium albo-atrum. The highly-quality genome of Verticillium albo-atrum provides a valuable resource for better understanding of the biological characteristics. Data description: We sequenced and assembled the genome of Verticillium albo-atrum using ONT long reads combined with DNBSEQ-T7 paired-end short reads and anchored 11 contigs into 8 chromosomes using Hi-C chromatin contact information, yielding a 35.95 Mb chromosome-level genome assembly with a N50 of 4.20 Mb. In addition, transcript-based annotation identified 9967 protein-coding genes, of which 84.17% were functionally annotated. BUSCO analysis demonstrated that this genome assembly has a high-level completeness of 96.47% gene coverage.
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