数字农科院2.0

A chromosome-level genome assembly of Verticillium albo-atrum, an dangerous quarantine pathogen known for causing verticillium wilt

文献类型: 外文期刊

作者: Yang Chen;Yunfang Chen;Yanfeng Deng;Zhenchuan Mao;Yan Li;Jianlong Zhao;Guohua Chen;Jian Ling

作者机构:

关键词: Genome assembly;Hi-C chromatin contact information;Verticillium albo-atrum

期刊名称: BMC Genomic Data

ISSN: 2730-6844

年卷期: 2025 年 26 卷 1 期

页码:

收录情况: SCIE(2025版)

摘要: Objectives: Verticillium albo-atrum is one of the most dangerous quarantine pathogen, which is a soil-borne pathogen known for causing verticillium wilt, a disease that affects a wide range of plants, including many economically important crops. However, the lack of high-quality genome resource has greatly limited the research of molecular and evolutionary mechanisms of Verticillium albo-atrum. The highly-quality genome of Verticillium albo-atrum provides a valuable resource for better understanding of the biological characteristics. Data description: We sequenced and assembled the genome of Verticillium albo-atrum using ONT long reads combined with DNBSEQ-T7 paired-end short reads and anchored 11 contigs into 8 chromosomes using Hi-C chromatin contact information, yielding a 35.95 Mb chromosome-level genome assembly with a N50 of 4.20 Mb. In addition, transcript-based annotation identified 9967 protein-coding genes, of which 84.17% were functionally annotated. BUSCO analysis demonstrated that this genome assembly has a high-level completeness of 96.47% gene coverage.

分类号:

  • 相关文献

[1]Improving the Completeness of Chromosome-Level Assembly by Recalling Sequences from Lost Contigs. Junyang Liu,Fang Liu,Weihua Pan. 2023

[2]GAEP: a comprehensive genome assembly evaluating pipeline. Zhang, Yong,Lu, Hong-Wei,Ruan, Jue. 2023

[3]High-Quality Genomes of Pangolins: Insights into the Molecular Basis of Scale Formation and Adaption to Myrmecophagous Diet. Yan D.,Luo X.,Tang J.,Xu S.,Huang K.,Wang X.,Feng T.,Que T.,Jia M.,Guo X.,Rehman S.U.,Li Z.,Yang Y.,Li K.,Cui K.,Ruan J.,Liu Q.. 2023

[4]The discovery of a key prenyltransferase gene assisted by a chromosome-level Epimedium pubescens genome. Guoan Shen,Yanjiao Luo,Yu Yao,Guoqing Meng,Yixin Zhang,Yuanyue Wang,Chaoqun Xu,Xiang Liu,Cheng Zhang,Gang Ding,Yongzhen Pang,Hui Zhang,Baolin Guo. 2022

[5]Chromosome-scale genome assembly-assisted identification of Mi-9 gene in Solanum arcanum accession LA2157, conferring heat-stable resistance to Meloidogyne incognita. Jiang, Lijun,Ling, Jian,Zhao, Jianlong,Yang, Yu,Yang, Yuhong,Li, Yan,Jiao, Yang,Mao, Zhenchuan,Wang, Yunsheng,Xie, Bingyan. 2023

[6]Transposon insertions regulate genome-wide allele-specific expression and underpin flower colour variations in apple (Malus spp.). Tian, Yi,Thrimawithana, Amali,Ding, Tiyu,Guo, Jian,Gleave, Andrew,Chagne, David,Ampomah-Dwamena, Charles,Ireland, Hilary S.,Schaffer, Robert J.,Luo, Zhiwei,Wang, Meili,An, Xiuhong,Wang, Dajiang,Gao, Yuan,Wang, Kun,Zhang, Hengtao,Zhang, Ruiping,Zhou, Zhe,Yan, Zhenli,Zhang, Liyi,Zhang, Caixia,Cong, Peihua,Deng, Cecilia H.,Yao, Jia-Long. 2022

[7]An Improved Genome Sequence Resource of Bipolaris maydis, Causal Agent of Southern Corn Leaf Blight. Wang, Yafei,Kang, Houxiang,Yao, Jinai,Li, Zhiqiang,Xia, Xinyao,Zhou, Shaoqun,Liu, Wende. 2022

[8]The Capparis spinosa var. herbacea genome provides the first genomic instrument for a diversity and evolution study of the Capparaceae family. Lei Wang,Liqiang Fan,Zhenyong Zhao,Zhibin Zhang,Li Jiang,Mao Chai,Changyan Tian. 2022

[9]Genome assembly of the Chinese maize elite inbred line RP125 and its EMS mutant collection provide new resources for maize genetics research and crop improvement. Shujun Nie,Bo Wang,Haiping Ding,Haijian Lin,Li Zhang,Qigui Li,Yujiao Wang,Bin Zhang,Anping Liang,Qi Zheng,Hui Wang,Huayang Lv,Kun Zhu,Minghui Jia,Xiaotong Wang,Jiyuan Du,Runtai Zhao,Zhenzhen Jiang,Caina Xia,Zhenghao Qiao,Xiaohu Li,Boyan Liu,Hongbo Zhu,Rong An,Yucui Li,Qian Jiang,Benfang Chen,Hongkai Zhang,Dening Wang,Changxiao Tang,Yang Yuan,Jie Dai,Jing Zhan,Weiqiang He,Xuebo Wang,Jian Shi,Bin Wang,Min Gong,Xiujing He,Peng Li,Li Huang,Hui Li,Chao Pan,Hong Huang,Guangsheng Yuan,Hai Lan,Yongxin Nie,Xinzheng Li,Xiangyu Zhao,Xiansheng Zhang,Guangtang Pan,Qingyu Wu,Fang Xu,Zhiming Zhang. 2021

[10]Compared analysis with a high-quality genome of weedy rice reveals the evolutionary game of de-domestication. Jie Ma,Hua Wei,Xiaoman Yu,Yang Lv,Yu Zhang,Qian Qian,Lianguang Shang,Longbiao Guo. 2022

[11]Chromosome-level genome assembly of the Muscovy duck provides insight into fatty liver susceptibility. Xu M.-M.,Gu L.-H.,Lv W.-Y.,Duan S.-C.,Li L.-W.,Du Y.,Lu L.-Z.,Zeng T.,Hou Z.-C.,Ma Z.S.,Chen W.,Adeola A.C.,Han J.-L.,Xu T.-S.,Dong Y.,Zhang Y.-P.,Peng M.-S.. 2022

[12]The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits. Zhang, Kang,Yang, Yinqing,Zhang, Xin,Zhang, Lingkui,Fu, Yu,Guo, Zhongwei,Chen, Shumin,Wu, Jian,Schnable, James C.,Yi, Keke,Wang, Xiaowu,Cheng, Feng. 2023

[13]A chromosome-level genome assembly of the potato grouper (Epinephelus tukula). Wang L.,Li Z.,Liu Y.,Chen S.,Li L.,Duan P.,Wang X.,Li W.,Wang Q.,Zhai J.,Tian Y.. 2022

[14]A comprehensive overview of cotton genomics, biotechnology and molecular biological studies. Wen, Xingpeng,Chen, Zhiwen,Yang, Zuoren,Wang, Maojun,Jin, Shuangxia,Wang, Guangda,Zhang, Li,Wang, Lingjian,Li, Jianying,Saeed, Sumbul,He, Shoupu,Wang, Zhi,Wang, Kun,Kong, Zhaosheng,Li, Fuguang,Zhang, Xianlong,Chen, Xiaoya,Zhu, Yuxian. 2023

[15]Genome Assembly of Alfalfa Cultivar Zhongmu-4 and Identification of SNPs Associated with Agronomic Traits. Ruicai Long,Fan Zhang,Zhiwu Zhang,Mingna Li,Lin Chen,Xue Wang,Wenwen Liu,Tiejun Zhang,Long Xi Yu,Fei He,Xueqian Jiang,Xijiang Yang,Changfu Yang,Zhen Wang,Junmei Kang,Qingchuan Yang. 2022

[16]The chromosome-scale assembly of the Salvia rosmarinus genome provides insight into carnosic acid biosynthesis. Han, Danlu,Li, Wenliang,Hou, Zhuangwei,Lin, Chufang,Xie, Yun,Zhou, Xiaofang,Gao, Yuan,Huang, Junwen,Lai, Jianbin,Wang, Li,Zhang, Liangsheng,Yang, Chengwei. 2023

[17]The meso-octoploid Heliophila variabilis genome sheds a new light on the impact of polyploidization and diploidization on the diversity of the Cape flora. Huang, Yile,Guo, Xinyi,Zhang, Kang,Mandakova, Terezie,Cheng, Feng,Lysak, Martin A.. 2023

[18]Genomes of single- and double-petal jasmines (Jasminum sambac) provide insights into their divergence time and structural variations. Wang, Pengjie,Fang, Jingping,Lin, Hongzheng,Yang, Wenwen,Yu, Jiaxin,Hong, Yaping,Jiang, Mengwei,Gu, Mengya,Chen, Qinchang,Zheng, Yucheng,Liao, ZhenYang,Chen, Guixin,Yang, Jiangfan,Jin, Shan,Zhang, Xingtan,Ye, Naixing. 2022

[19]Genome assembly and transcriptome analysis provide insights into the antischistosome mechanism of Microtus fortis. Hong Li,Zhen Wang,Shumei Chai,Xiong Bai,Guohui Ding,Yuanyuan Li,Junyi Li,Qingyu Xiao,Benpeng Miao,Weili Lin,Jie Feng,Mingyue Huang,Cheng Gao,Bin Li,Wei Hu,Jiaojiao Lin,Zhiqiang Fu,Jianyun Xie,Yixue Li. 2021

[20]Chromosome-level genome assembly of a regenerable maize inbred line A188. Guifang Lin,Cheng He,Jun Zheng,Dal-Hoe Koo,Ha Le,Huakun Zheng,Tej Man Tamang,Jinguang Lin,Yan Liu,Mingxia Zhao,Yangfan Hao,Frank McFraland,Bo Wang,Yang Qin,Haibao Tang,Donald R. McCarty,Hairong Wei,Myeong-Je Cho,Sunghun Park,Heidi Kaeppler,Shawn M. Kaeppler,Yunjun Liu,Nathan Springer,Patrick S. Schnable,Guoying Wang,Frank F. White,Sanzhen Liu. 2021

作者其他论文 更多>>