数字农科院2.0

Thai Local Chicken Breeds, Chee Fah and Fah Luang, Originated from Chinese Black-Boned Chicken with Introgression of Red Junglefowl and Domestic Chicken Breeds

文献类型： 外文期刊

作者： Trifan Budi;Worapong Singchat;Nivit Tanglertpaibul;Wongsathit Wongloet;Aingorn Chaiyes;Nattakan Ariyaraphong;Worawit Thienpreecha;Wannapa Wannakan;Autchariyapron Mungmee;Thanyapat Thong;Pish Wattanadilokchatkun;Thitipong Panthum;Syed Farhan Ahmad;Artem Lisachov;Narongrit Muangmai;Rattanaphon Chuenka;Pollavat Prapattong;Mitsuo Nunome;Wiyada Chamchumroon;Kyudong Han;Santi Pornpipatsiri;Thepchai Supnithi;Min Sheng Peng;Jian Lin Han;Yoichi Matsuda;Prateep Duengkae;Phuechphol Noinafai;Kornsorn Srikulnath

作者机构：

关键词： black-boned chicken;gene pool;genetic diversity;habitat suitability;haplotype

期刊名称： Sustainability (Switzerland)

ISSN： 2071-1050

年卷期： 2023 年 15 卷 8 期

页码：

收录情况： SCIE（2023版） ; ; SSCI（2023版）

摘要： Knowledge of the genetic characteristics, origin, and local adaptation of chickens is essential to identify the traits required for chicken breeding programs. Chee Fah and Fah Luang are black-boned chicken breeds reared in Chiang Rai, Thailand. Chickens are an important part of the local economy and socio-culture; however, the genetic diversity, characteristics, and origins of these two breeds have been poorly studied. Here, we investigated the genetic diversity, gene pool, and origin of the Chee Fah and Fah Luang chickens using mitochondrial DNA D-loop (mtDNA D-loop) sequencing and microsatellite genotyping, as well as habitat suitability analysis using maximum entropy modeling. The MtDNA D-loop sequencing and microsatellite genotype analyses indicated that the Chee Fah and Fah Luang chickens shared haplogroups A, B, and CD with Chinese black-boned chickens. Gene pool analysis revealed that the Chee Fah and Fah Luang chickens have distinct genetic patterns compared to Thai domestic chickens and red junglefowl. Some gene pools of red junglefowl and other Thai domestic chickens were observed within the Chee Fah and Fah Luang chicken gene pool structures, suggesting genetic exchange. The data indicate that the Chee Fah and Fah Luang chickens originated from Chinese indigenous black-boned chicken breeds and experienced crossbreeding/hybridization and introgression with red junglefowl and other domestic breeds during domestication. Interestingly, the Chee Fah and Fah Luang chickens from Chiang Rai shared the same allelic gene pool, which was not shared with the Chee Fah and Fah Luang chickens from Mae Hong Son, suggesting at least two gene pool origins in the Chee Fah and Fah Luang chicken populations. Alternatively, different gene pools in the Chee Fah and Fah Luang chickens from different localities might be caused by differences in environmental factors, especially elevation.

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