数字农科院2.0

Collinearity-based Assembly Correction Tool GUI: Software for collinearity-based genome assembly correction

文献类型： 外文期刊

作者： Zhang, Shengcheng;Du, Hejun;Zhang, Xingtan;Wang, Binzhong

作者机构：

关键词： （1-2-2）genome assembly;manually correction;algorithm;Python software

期刊名称： G3-GENES GENOMES GENETICS

ISSN： 2160-1836

年卷期： 2025 年

页码：

收录情况： SCIE（2025版）

摘要： Genome assembly errors can have a profound effect on downstream analyses. Collinearity-based Assembly Correction Tool GUI is designed to rectify these errors by leveraging collinearity information between the assembled genome and a reference genome. Collinearity-based Assembly Correction Tool GUI provides a user-friendly interface for visualizing and manually correcting assembly errors. It supports various operations such as insertion, deletion, inversion, and swapping of contigs and chromosomes. The software automatically reclusters, relabels, and redraws the assembly after each modification, ensuring that users can easily track changes. Collinearity-based Assembly Correction Tool GUI is a robust tool designed to efficiently correct large-scale assembly errors in polyploid genomes, featuring advanced collinearity detection capabilities.

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