数字农科院2.0

Population sequencing of cherry accessions unravels the evolution of Cerasus species and the selection of genetic characteristics in edible cherries

文献类型： 外文期刊

作者： Lei, Yahui;Jiu, Songtao;Xu, Yan;Chen, Baozheng;Dong, Xiao;Lv, Zhengxin;Bernard, Anthony;Liu, Xunju;Wang, Lei;Wang, Li;Wang, Jiyuan;Zhang, Zhuo;Cai, Yuliang;Zheng, Wei;Zhang, Xu;Li, Fangdong;Li, Hongwen;Liu, Congli;Li, Ming;Wang, Jing;Zhu, Jijun;Peng, Lei;Barreneche, Teresa;Yu, Fei;Wang, Shiping;Dong, Yang;Elisabeth, Dirlewanger;Duan, Shengchang;Zhang, Caixi

作者机构：

关键词： Cerasus subgenus;Population structure;Genetic diversity;Edible cherries;Selection signatures

期刊名称： MOLECULAR HORTICULTURE

ISSN： 2730-9401

年卷期： 2025 年 5 卷 1 期

页码：

收录情况： SCIE（2025版） ; ; CSCD（2025-2026年度） ; ; 农林核心（2024版）

摘要： Cerasus is a subgenus of Prunus in the family Rosaceae that is popular owing to its ornamental, edible, and medicinal properties. Understanding the evolution of the Cerasus subgenus and identifying selective trait loci in edible cherries are crucial for the improvement of cherry cultivars to meet producer and consumer demands. In this study, we performed a de novo assembly of a chromosome-scale genome for the sweet cherry (Prunus avium L.) cultivar 'Burlat', covering 297.55 Mb and consisting of eight chromosomes with 33,756 protein-coding genes. The resequencing and population structural analysis of 384 Cerasus representative accessions revealed that they could be divided into four groups (Group 1, Group 2, Group 3, and Group 4). We inferred that Group 1 was the oldest population and Groups 2, 3, and 4 were clades derived from it. In addition, we found selective sweeps for fruit flavor and improved stress resistance in different varieties of edible cherries (P. avium, P. cerasus, and P. pseudocerasus). Transcriptome analysis revealed significant differential expression of genes associated with key pathways, such as sucrose starch and sucrose metabolism, fructose and mannose metabolism, and the pentose phosphate pathway, between the leaves and fruits of P. avium. This study enhances the understanding of the evolutionary processes of the Cerasus subgenus and provides resources for functional genomics research and the improvement of edible cherries.

分类号：

  • 相关文献

[1]Genetic Diversity and Selection Signatures in Synthetic-Derived Wheats and Modern Spring Wheat. Mohsin Ali,Shan Danting,Jiankang Wang,Hafsa Sadiq,Awais Rasheed,Zhonghu He,Huihui Li. 2022

[2]Genome Divergence and Dynamics in the Thin-Tailed Desert Sheep From Sudan. Adam Abied,Abulgasim M. Ahbara,Haile Berihulay,Lingyang Xu,Rabiul Islam,Faisal M. El-Hag,Mourad Rekik,Aynalem Haile,Jian Lin Han,Yuehui Ma,Qianjun Zhao,Joram M. Mwacharo. 2021

[3]Genetic Diversity, Selection Signatures, and Genome-Wide Association Study Identify Candidate Genes Related to Litter Size in Hu Sheep. Jingjing Bao,Jinke Xiong,Jupeng Huang,Peifu Yang,Mingyu Shang,Li Zhang. 2024

[4]Genomic Inbreeding and Runs of Homozygosity Analysis of Cashmere Goat. Qian Zhao,Chang Huang,Qian Chen,Yingxiao Su,Yanjun Zhang,Ruijun Wang,Rui Su,Huijuan Xu,Shucai Liu,Yuehui Ma,Qianjun Zhao,Shaohui Ye. 2024

[5]Geographical patterns of Toxoplasma gondii genetic diversity revealed by multilocus PCR-RFLP genotyping. Shwab, E. Keats,Majumdar, Debashree,Su, Chunlei,Zhu, Xing-Quan,Su, Chunlei,Pena, Hilda F. J.,Gennari, Solange M.,Dubey, Jitender P.. 2014

[6]POPULATION STRUCTURE AND GENETIC DIVERSITY OF MAIZE LANDRACES FROM THE SOUTHWEST MAIZE REGION OF CHINA. Liu, Z. Z.,Guo, R. H.,Wang, R. H.,Shi, Y. S.,Song, Y. C.,Wang, T. Y.,Li, Y.,Liu, Z. Z.,Cai, Y. L.,Guo, R. H.,Cao, M. J.,Zhao, J. R.,Wang, F. G.,Wang, R. H.. 2009

[7]Genetic Diversity and Population Structure of Broomcorn Millet (Panicum miliaceum L.) Cultivars and Landraces in China Based on Microsatellite Markers. Liu, Minxuan,Zhang, Shuang,Wang, Yinyue,Lu, Ping,Xu, Yue,He, Jihong,Wang, Yinyue. 2016

[8]Allozyme diversity and population structure of Caragana korshinskyi Kom. in China. Wang, Zan,Gao, Hongwen,Han, Jianguo,Wu, Yanqi. 2006

[9]Genetic diversity and structure of the core collection for maize inbred lines in China. Yu, Y.,Wang, R.,Shi, Y.,Song, Y.,Wang, T.,Li, Y.. 2007

[10]Evaluation of genetic diversity and structure of Vietnamese goat populations using multi locus microsatellite markers. Le Thi Thuy,Luu Quang Minh,Tran Thi Thu Thuy,Nguyen Van Ba,Dinh Van Binh,Nguyen Dang Ton,Han, Jian-Lin,Periasamy, Kathiravan.

[11]Genetic diversity and association mapping in a collection of selected Chinese soybean accessions based on SSR marker analysis. Li, Ying-Hui,Chang, Ru-Zhen,Qiu, Li-Juan,Smulders, Marinus J. M..

[12]Population structure of the wild soybean (Glycine soja) in China: implications from microsatellite analyses. Li, Yinghui,Qiu, Lijuan,Guo, Juan,Wang, Yunsheng,Chen, Jianjun,Wang, Ying,Liu, Yifei,Huang, Hongwen.

[13]Genetic diversity and differentiation of Ankole cattle populations in Uganda inferred from microsatellite data. Kugonza, D. R.,Mpairwe, D.,Kiwuwa, G. H.,Kugonza, D. R.,Jianlin, H.,Okeyo, A. M.,Hanotte, O.,Jianlin, H.,Nabasirye, M..

[14]Genetic diversity of gliadin in Secale cereale subsp segetale from Xinjiang, China. Che, Yonghe,Dai, Ming,Yang, Yanping,Yang, Xinming,Li, Xiuquan,Liu, Weihua,Li, Lihui.

[15]Assessment of genetic diversity and population structure of mung bean (Vigna radiata) germplasm using EST-based and genomic SSR markers. Chen, Honglin,Qiao, Ling,Wang, Lida,Wang, Suhua,Cheng, Xuzhen,Qiao, Ling,Blair, Matthew Wohlgemuth.

[16]Genetic diversity and linkage disequilibrium studies on a 3.1-Mb genomic region of chromosome 3B in European and Asian bread wheat (Triticum aestivum L.) populations. Hao, C. Y.,Perretant, M. R.,Choulet, F.,Wang, L. F.,Paux, E.,Sourdille, P.,Feuillet, C.,Balfourier, Francois,Hao, C. Y.,Wang, L. F.,Zhang, X. Y.,Hao, C. Y.,Wang, L. F.,Zhang, X. Y.,Hao, C. Y.,Wang, L. F.,Zhang, X. Y..

[17]Microsatellite analysis revealed genetic diversity and population structure among Chinese cashmere goats. Di, R.,Ma, Y. H.,He, X. H.,Zhao, Q. J.,Han, J. L.,Guan, W. J.,Chu, M. X.,Sun, W.,Pu, Y. P.,Vahidi, S. M. Farhad,Han, J. L.,Vahidi, S. M. Farhad.

[18]Comparison of SSRs and SNPs in assessment of genetic relatedness in maize. Yang, Xiaohong,Li, Jiansheng,Yan, Jianbing,Xu, Yunbi,Shah, Trushar,Li, Huihui,Han, Zhenhai,Yan, Jianbing.

[19]Analysis of Genetic Diversity and Population Structure of Maize Landraces from the South Maize Region of China. Liu Zhi-zhai,Guo Rong-hua,Wang Rong-huan,Shi Yun-su,Song Yan-chun,Wang Tian-yu,Li Yu,Liu Zhi-zhai,Cai Yi-lin,Guo Rong-hua,Cao Mo-ju,Zhao Jiu-ran,Wang Feng-ge,Wang Rong-huan. 2010

[20]Genetic analysis and molecular characterization of Chinese sesame (Sesamum indicum L.) cultivars using Insertion-Deletion (InDel) and Simple Sequence Repeat (SSR) markers. Wu, Kun,Yang, Minmin,Liu, Hongyan,Mei, Ju,Zhao, Yingzhong,Tao, Ye. 2014

作者其他论文 更多>>