数字农科院2.0

ddRAD sequencing: an emerging technology added to the biosecurity toolbox for tracing the origin of brown marmorated stink bug, Halyomorpha halys (Hemiptera: Pentatomidae)

文献类型： 外文期刊

作者： Yan Juncong;Vétek Gábor;Pal Chandan;Zhang Jinping;Gmati Rania;Fan Qing-Hai;Gunawardana Disna N.;Burne Allan;Anderson Diane;Balan Rebijith Kayattukandy;George Sherly;Farkas Péter;Li Dongmei

作者机构：

关键词： Biosecurity; BMSB; ddRADSeq; Invasion; Population genetics; Restriction digestion; SNP

期刊名称： BMC Genomics

ISSN： 1471-2164

年卷期： 2021 年 22 卷 1 期

页码：

收录情况： JCR（2021版）

摘要： Background: Brown marmorated stink bug (BMSB), Halyomorpha halys (Hemiptera: Pentatomidae) is native to East Asia but has invaded many countries in the world. BMSB is a polyphagous insect pest and causes significant economic losses to agriculture worldwide. Knowledge on the genetic diversity among BMSB populations is scarce but is essential to understand the patterns of colonization and invasion history of local populations. Efforts have been made to assess the genetic diversity of BMSB using partial mitochondrial DNA sequences but genetic divergence on mitochondria is not high enough to precisely accurately identify and distinguish various BMSB populations. Therefore, in this study, we applied a ddRAD (double digest restriction-site associated DNA) sequencing approach to ascertain the genetic diversity of BMSB populations collected from 12 countries (2 native and 10 invaded) across four continents with the ultimate aim to trace the origin of BMSBs intercepted during border inspections and post-border surveillance. Result: A total of 1775 high confidence single nucleotide polymorphisms (SNPs) were identified from ddRAD sequencing data collected from 389 adult BMSB individuals. Principal component analysis (PCA) of the identified SNPs indicated the existence of two main distinct genetic clusters representing individuals sampled from regions where BMSB is native to, China and Japan, respectively, and one broad cluster comprised individuals sampled from countries which have been invaded by BMSB. The population genetic structure analysis further discriminated the genetic diversity among the BMSB populations at a higher resolution and distinguished them into five potential genetic clusters. Conclusion: The study revealed hidden genetic diversity among the studied BMSB populations across the continents. The BMSB populations from Japan were genetically distant from the other studied populations. Similarly, the BMSB populations from China were also genetically differentiated from the Japanese and other populations. Further genetic structure analysis revealed the presence of at least three genetic clusters of BMSB in the invaded countries, possibly originating via multiple invasions. Furthermore, this study has produced novel set of SNP markers to enhance the knowledge of genetic diversity among BMSB populations and demonstrates the potential to trace the origin of BMSB individuals for future invasion events. © 2021, The Author(s).

分类号：

  • 相关文献

[1]Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest. Giordano R., Donthu R.K., Zimin A.V., Julca Chavez I.C., Gabaldon T., van Munster M., Hon L., Hall R., Badger J.H., Nguyen M., Flores A., Potter B., Giray T., Soto-Adames F.N., Weber E., Marcelino J.A.P., Fields C.J., Voegtlin D.J., Hill C.B., Hartman G.L., Akraiko T., Aschwanden A., Avalos A., Band M., Bonning B., Bretaudeau A., Chiesa O., Chirumamilla A., Coates B.S., Cocuzza G., Cullen E., Desborough P., Diers B., DiFonzo C., Heimpel G.E., Herman T., Huanga Y., Knodel J., Ko C.-C., Labrie G., Lagos-Kutz D., Lee J.-H., Lee S., Legeai F., Mandrioli M., Manicardi G.C., Mazzoni E., Melchiori G., Micijevic A., Miller N., Nasuddin A., Nault B.A., O'Neal M.E., Panini M., Pessino M., Prischmann-Voldseth D., Robertson H.M., Sijun Liu, Song H., Tilmon K., Tooker J., Wu K., Zhan S., Soybean aphid research community. 2020

[2]MGISEQ-2000、HiSeq 2000与NovaSeq 6000平台全基因组重测序数据的比较分析. 李伟宁,刘刚,周荣,唐中林,刘剑锋,孙飞舟. 2021

[3]水稻剑叶形态QTL定位及候选基因分析. 王盛,叶涵斐,李三峰,姜嘉骥,张月,潘晨阳,周维永,陈维娴,王珂欣,戴高兴,方媛,饶玉春,王跃星. 2021

[4]产茸相关SNP位点在7个梅花鹿群体中的验证. 田雪琪,李洋,刘汇涛,王天骄,邢秀梅. 2021

[5]A Major And Stable Qtl F.or Bacteria Wilt Resistance O n Chromosome B02 Identified Using A High-Density Snp-Based Genetic Linkage Map In Cultivated Peanut Yuanza 9102 Derived Population. Zhou, Xiaojing,Liu, Nian,Liao, Boshou,Lei, Yong,Wang, Lifang,Wang, Lifang,Jiang, Huifang,Chen, Yuning,Yan, Liying,Chen, Weigang,Huang, Li,Luo, Huaiyong,Shen, Jinxiong,Ren, Xiaoping. 2018

[6]Chinese farmers' willingness to accept compensation to practice safe disposal of HPAI infected chicken. Huang, Zeying,Wang, Jimin,Zuo, Alec.

[7]Factors affecting Chinese broiler farmers' main preventive practices in response to highly pathogenic avian influenza. Huang, Zeying,Wang, Jimin,Zeng, Di.

[8]Reevaluation of biosecurity of Ophraella communa against sunflower (Helianthus annuus). Zhou, Zhong-Shi,Guo, Jian-Ying,Zheng, Xing-Wen,Luo, Min,Chen, Hong-Song,Wan, Fang-Hao,Zheng, Xing-Wen,Luo, Min,Chen, Hong-Song. 2011

[9]Deciphering The Routes Of Invasion O.f Drosophila Suzukii By M eans Of Abc Random Forest. Marin, Jean-Michel,Martinez-Sanudo, Isabel,Pascual, Marta,Kimura, Masahito T.,Loeb, Gregory,Loiseau, Anne,Price, Donald K.,Singh, Nadia,Tamura, Koichiro,Zhang, Jinping,Pudlo, Pierre,Richmond, Maxi Polihronakis,Shearer, Peter,Depra, Marindia,Duyck, Pierre Francois,Estoup, Arnaud,Cattel, Julien,Chen, Xiao,Debat, Vincent,Fellous, Simon,Hufbauer, Ruth A.,Hufbauer, Ruth A.,Kenis, Marc,Foucaud, Julien,Fraimout, Antoine,Guedot, Christelle. 2017

[10]Characterization Of Duck (Anas Platyrhynchos) S.hort Tandem Repeat Variation B y Population-Scale Genome Resequencing. Fan, WL, Xu, LY, Cheng, H, Li, M, Liu, HH, Jiang, Y, Guo, YM, Zhou, ZK, Hou, SS. 2018

[11]Prevention and control strategies of african swine fever and progress on pig farm repopulation in China. Yuanjia Liu,Xinheng Zhang,Wenbao Qi,Yaozhi Yang,Zexin Liu,Tongqing An,Xiuhong Wu,Jianxin Chen. 2021

[12]Human Impact On The Diversity A.nd Virulence Of The U biquitous Zoonotic Parasite Toxoplasma Gondii. Shwab, EK, Saraf, P, Zhu, XQ, Zhou, DH, McFerrin, BM, Ajzenberg, D, Schares, G, Hammond-Aryee, K, van Helden, P, Higgins, SA, Gerhold, RW, Rosenthal, BM, Zhao, XP, Dubey, JP, Su, CL. 2018

[13]Rapid And Strong Population Genetic Differentiation And Genomic Signatures Of Climatic Adaptation In An Invasive Mealybug. Ma, L, Cao, LJ, Hoffmann, AA, Gong, YJ, Chen, JC, Chen, HS, Wang, XB, Zeng, AP, Wei, SJ, Zhou, ZS. 2020

[14]Needle-free intradermal delivery of a recombinant PRRSV-vectored CSFV E2 vaccine enhances humoral immunity and growth performance in piglets. Wenna Shuai,Qi Sun,Jiale Li,Wei Shen,Junrui Zhu,Ziqiang Guo,Meng Luo,Yifan Zeng,Jinbin Wang,Guangzhi Tong,Yanjun Zhou,Fei Gao. 2026

[15]A Combination Of Citrus Reticulata P.eel And Black Tea I nhibits Migration And Invasion Of Liver Cancer Via Pi3K/Akt And Mmps Signaling Pathway. Li, Qiuhua,Xiang, Limin,Zhang, Wenji,Lai, Xingfei,Sun, Shili,Li, Dongli,Li, Dongli,Huo, Mengen,Wen, Shuai,Sun, Lingli,An, Ran. 2019

[16]Translationally Controlled Tumor Protein Is R.equired For The Fast G rowth Of Toxoplasma Gondii And Maintenance Of Its Intracellular Development. Zheng, J, Chen, YP, Li, ZR, Cao, SN, Zhang, ZX, Jia, HL. 2018

[17]Effects Of Host Fatty Acid-Binding P.rotein 4 On Eimeria T enella Sporozoites Invasion Of Cells. Wang, L, Zhu, SH, Zhao, QP, Huang, B, Lv, L, Liu, GL, Li, ZH, Zhao, HZ, Han, HY, Dong, H. 2019

[18]A Global Invasion By The T.hrip, Frankliniella Occidentalis: Current V irus Vector Status And Its Management. He, Zhen,He, Zhen,Wu, Sheng:Yong,Reitz, Stuart R.,Guo, Jing:Fei,Lei, Zhong:Ren. 2019

[19]Toxoplasma Gondii Immune Mapped Protein 1. Is Anchored To T he Inner Leaflet Of The Plasma Membrane And Adopts A Novel Protein Fold. Jia, YG, Benjamin, S, Liu, Q, Xu, YQ, Dogga, SK, Liu, J, Matthews, S, Soldati-Favre, D. 2017

[20]Case study on the first immigration of fall armyworm, Spodoptera frugiperda invading into China. SUN Xiao-xu,HU Chao-xing,JIA Hui-ru,WU Qiu-lin,SHEN Xiu-jing,ZHAO Sheng-yuan,JIANG Yu-ying,WU Kong-ming. 2021

作者其他论文 更多>>