数字农科院2.0

Genome-wide characterization and sequence polymorphism analyses of cysteine-rich poly comb-like protein in Glycine max

文献类型： 外文期刊

作者： Tayyaba Nisar;Muhammad Hammad Nadeem Tahir;Shahid Iqbal;Muhammad Sajjad;Muhammad Azhar Nadeem;Ghulam Qanmber;Ayesha Baig;Zulqurnain Khan;Zhengyun Zhao;Zhide Geng;Shoaib Ur Rehman

作者机构：

关键词： association analyses;drought;GmCPP;kompetitive allele specific PCR;phylogenetic analyses;soybean

期刊名称： Frontiers in Plant Science

ISSN： 1664-462X

年卷期： 2022 年 13.0 卷

页码：

收录情况： SCIE（2022版）

摘要： Cysteine-rich poly comb-like protein (CPP) is a member of cysteine-rich transcription factors that regulates plant growth and development. In the present work, we characterized twelve CPP transcription factors encoding genes in soybean (Glycine max). Phylogenetic analyses classified CPP genes into six clades. Sequence logos analyses between G. max and G. soja amino acid residues exhibited high conservation. The presence of growth and stress-related cis-acting elements in the upstream regions of GmCPPs highlight their role in plant development and tolerance against abiotic stress. Ka/Ks levels showed that GmCPPs experienced limited selection pressure with limited functional divergence arising from segmental or whole genome duplication events. By using the PAN-genome of soybean, a single nucleotide polymorphism was identified in GmCPP-6. To perform high throughput genotyping, a kompetitive allele-specific PCR (KASP) marker was developed. Association analyses indicated that GmCPP-6-T allele of GmCPP-6 (in exon region) was associated with higher thousand seed weight under both water regimes (well-water and water-limited). Taken together, these results provide vital information to further decipher the biological functions of CPP genes in soybean molecular breeding.

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