数字农科院2.0

Genome-Wide Systematic Characterization Of Bzip T.ranscription Factors And Their E xpression Profiles During Seed Development And In Response To Salt Stress In Peanut

文献类型： 外文期刊

作者： Wang, ZH; Yan, LY; Wan, LY; Huai, DX; Kang, YP; Shi, L; Jiang, HF; Lei, Y; Liao, BS

作者机构：

关键词： bZIP gene family; Peanut; Evolution; Expression analysis

期刊名称： BMC GENOMICS

ISSN： 1471-2164

年卷期： 2019 年 20 卷

页码：

收录情况： JCR（2021版）

摘要： BackgroundPlant basic leucine zipper (bZIP) transcription factors play crucial roles in plant growth, development, and abiotic stress responses. However, systematic investigation and analyses of the bZIP gene family in peanut are lacking in spite of the availability of the peanut genome sequence.ResultsIn this study, we identified 50 and 45 bZIP genes from Arachis duranensis and A. ipaensis genomes, respectively. Phylogenetic analysis showed that Arachis bZIP genes were classified into nine groups, and these clusters were supported by several group-specific features, including exon/intron structure, intron phases, MEME motifs, and predicted binding site structure. We also identified possible variations in DNA-binding-site specificity and dimerization properties among different Arachis bZIPs by inspecting the amino acid residues at some key sites. Our analysis of the evolutionary history analysis indicated that segmental duplication, rather than tandem duplication, contributed greatly to the expansion of this gene family, and that most Arachis bZIPs underwent strong purifying selection. Through RNA-seq and quantitative real-time PCR (qRT-PCR) analyses, the co-expressed, differentially expressed and several well-studied homologous bZIPs were identified during seed development stages in peanut. We also used qRT-PCR to explore changes in bZIP gene expression in response to salt-treatment, and many candidate bZIPs in groups A, B, and S were proven to be associated with the salt-stress response.ConclusionsThis study have conducted a genome-wide identification, characterization and expression analysis of bZIP genes in Arachis genomes. Our results provide insights into the evolutionary history of the bZIP gene family in peanut and the funcntion of Arachis bZIP genes during seed development and in response to salt stress.

分类号：

  • 相关文献

[1]Genome-Wide Exploration And Characterization Of M.ir172/Euap2 Genes In Brassica N apus L. For Likely Role In Flower Organ Development. Gao, Yumin,Ping, Xiaoke,Tan, Yingchao,Wang, Jia,Xu, Xinfu,Wang, Tengyue,Lu, Kun,Cao, Yanru,Jian, Hongju,Liu, Liezhao. 2019

[2]花生播种期施用绿僵茵防治蛴螬的研究. 农向群,刘春琴,席国成,张星,张泽华. 2011

[3]Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes. Wang, Zhihui,Cheng, Ke,Wan, Liyun,Yan, Liying,Jiang, Huifang,Liu, Shengyi,Lei, Yong,Liao, Boshou. 2015

[4]Identification of the bZIP Gene Family and Investigation of Their Response to Drought Stress in Dendrobium catenatum. Wang P.,Li Y.,Zhang T.,Kang Y.,Li W.,Wang J.,Yu W.,Zhou Y.. 2023

[5]Genome-Wide Expression Quantitative Trait Locus A.nalysis In A Recombinant I nbred Line Population For Trait Dissection In Peanut. Zhou, Xiaojing,Chen, Weigang,Jiang, Huifang,Luo, Huaiyong,Liao, Boshou,Liu, Nian,Pandey, Manish K.,Lei, Yong,Liu, Xia,Xue, Xiaomeng,Huai, Dongxin,Varshney, Rajeev K.,Huang, Li,Ren, Xiaoping,Chen, Yuning,Xiao, Yingjie,Chen, Haiwen,Liu, Kede,Huang, Li. 2019

[6]Genetic Variation And Association Mapping O.f Seed-Related Traits In C ultivated Peanut (Arachis Hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers. Chen, Weigang,Ren, Xiaoping,Huang, Li,Liao, Boshou,Zhou, Xiaojing,Lei, Yong,Luo, Huaiyong,Wu, Bei,Pandey, Manish K.,Jiang, Huifang,Varshney, Rajeev K.,Li, Zeqing,Chen, Yuning,Zhao, Jiaojiao,Xia, Youlin. 2017

[7]Intercropping In Sugarcane Cultivation Influenced T.he Soil Properties And E nhanced The Diversity Of Vital Diazotrophic Bacteria. Wang, Fei-Yong,Wang, Fei-Yong,Solanki, Manoj Kumar,Yang, Li-Tao,Wang, Zhen,Wang, Fei-Yong,Singh, Rajesh Kumar,Li, Chang-Ning,Li, Chang-Ning,Lan, Tao-Ju,Singh, Pratiksha,Li, Yang-Rui,Li, Yang-Rui. 2017

[8]Effects Of Tobacco-Peanut Relay Intercropping On Soil Bacteria Community Structure. Gao, L, Liu, XM, Du, YM, Zong, H, Shen, GM. 2019

[9]Carboxin And Its Major Metabolites R.esidues In Peanuts: Levels, D ietary Intake And Chronic Intake Risk Assessment. Xu, Jun,Wei, Dongmei,Wei, Dongmei,Liu, Xingang,Dong, Fengshou,Wu, Xiaohu,Ji, Mingshan,Zheng, Yongquan. 2019

[10]Residue Behaviour And Safety Evaluation O.f Fenaminstrobin In Peanut F ield Ecosystems. You, XW, Sui, CC, Li, YQ, Wang, XG, Xu, JL, Zheng, X, Chen, D, Zhu, GY. 2017

[11]The Yellow Stripe-Like (Ysl) Gene F.unctions In Internal Copper T ransport In Peanut. Dai, J, Wang, NQ, Xiong, HC, Qiu, W, Nakanishi, H, Kobayashi, T, Nishizawa, NK, Zuo, YM. 2018

[12]Quantitative proteomics analysis reveals the response mechanism of peanut ( Arachis hypogaea L.) to imbibitional chilling stress. H. Chen,N. Liu,R. Xu,X. Chen,Y. Zhang,R. Hu,X. Lan,Z. Tang,G. Lin. 2021

[13]High-Density Genetic Linkage Map Construction Using Whole-Genome Resequencing for Mapping QTLs of Resistance to Aspergillus flavus Infection in Peanut. Jiang Y.,Luo H.,Yu B.,Ding Y.,Kang Y.,Huang L.,Zhou X.,Liu N.,Chen W.,Guo J.,Huai D.,Lei Y.,Jiang H.,Yan L.,Liao B.. 2021

[14]Identification Of Two Novel Peanut Genotypes Resistant To Aflatoxin Production And Their Snp Markers Associated With Resistance. Yu, BL, Jiang, HF, Pandey, MK, Huang, L, Huai, DX, Zhou, XJ, Kang, YP, Varshney, RK, Sudini, HK, Ren, XP, Luo, HY, Liu, N, Chen, WG, Guo, JB, Li, WT, Ding, YB, Jiang, YF, Lei, Y, Liao, BS. 2020

[15]Peanut (Arachis hypogaea L.) pod and rhizosphere harbored different bacterial communities. Xu Wen-yue,Wang Mei-Ling,Sun Xiao-Xiao,Shu Chang-Long,Zhang Jie,Geng Li-Li. 2021

[16]Estimating Peanut Leaf Chlorophyll Content W.ith Dorsiventral Leaf Adjusted I ndices: Minimizing The Impact Of Spectral Differences Between Adaxial And Abaxial Leaf Surfaces. Xie, MM, Wang, ZQ, Huete, A, Brown, LA, Wang, HY, Xie, QY, Xu, XP, Ding, YL. 2019

[17]Evaluation Of Portable And Benchtop Nir For Classification Of High Oleic Acid Peanuts And Fatty Acid Quantitation. Yu, HW, Liu, HZ, Wang, Q, van Ruth, S. 2020

[18]Rapid High-Throughput Determination Of Major Components And Amino Acids In A Single Peanut Kernel Based On Portable Near-Infrared Spectroscopy Combined With Chemometrics. Yu, HW, Liu, HZ, Erasmus, SW, Zhao, SM, Wang, Q, van Ruth, SM. 2020

[19]Effect of ARC-BBBE microbial inoculant on main phytohormones in peanut root from seedling to podding stage. Sichen Guan, Jin Mao, Qiaomei Qin, Na Li, Ling Cheng, Xianglong Yang, Qi Zhang, Peiwu Li. 2025

[20]Geographical Variation in Nutritional Components of Peanut: Evidence From Multi‐Region Production Areas. 王雪妍,戚欣,岳晓凤,方梦雪,刘奥,马飞,喻理,汪雪芳,王督,李培武,张良晓. 2025

作者其他论文 更多>>