数字农科院2.0

Integration Of Metabolome And Transcriptome Reveals Flavonoid Accumulation In The Intergeneric Hybrid Between Brassica Rapa And Raphanus Sativus

文献类型: 外文期刊

作者: Xia, Heng;Long, Yan;Zhang, Libin;Chao, Hongbo;Yin, Yongtai;Ma, Chuang;Batley, Jacqueline;Wu, Jiangsheng;Li, Maoteng;Ge, Xianhong;Li, Zaiyun

作者机构:

期刊名称: SCIENTIFIC REPORTS

ISSN: 2045-2322

年卷期: 2019 年 9 卷

页码:

摘要: Brassica rapa and Raphanus sativus are two important edible vegetables that contain numerous nutritional ingredients. However, the agronomic traits and nutritional components of the intergeneric hybrid of B. rapa and R. sativus remain poorly understood. In this study, we used a stably inherited intergeneric hybrid of B. rapa and R. sativus as a model to study its metabolome and transcriptome profiles. Morphological and cytological analysis showed the intergeneric hybrid had the expected chromosome number and normal meiosis behavior. Moreover, the metabolome analysis showed multiple important secondary metabolites, including flavonoids and glucosinolates, were significantly upregulated in the hybrid. Furthermore, transcriptome data revealed that the expression level of the important genes involved in phenylpropanoid and flavonoid pathways was significantly upregulated in the hybrid. Ultimately, our data indicate the intergeneric hybrid will be a valuable bioengineering resource and promise to become a new-type hybrid vegetable with great medicinal value in future.

分类号:

  • 相关文献
作者其他论文 更多>>
  • EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research

    作者:Bai, Defeng;Chen, Tong;Xun, Jiani;Ma, Chuang;Luo, Hao;Yang, Haifei;Cao, Chen;Cao, Xiaofeng;Cui, Jianzhou;Deng, Yuan-Ping;Deng, Zhaochao;Dong, Wenxin;Dong, Wenxue;Du, Juan;Fang, Qunkai;Fang, Wei;Fang, Yue;Fu, Fangtian;Fu, Min;Fu, Yi-Tian;Gao, He;Ge, Jingping;Gong, Qinglong;Gu, Lunda;Guo, Peng;Guo, Yuhao;Hai, Tang;Liu, Hao;He, Jieqiang;He, Zi-Yang;Hou, Huiyu;Huang, Can;Ji, Shuai;Jiang, ChangHai;Jiang, Gui-Lai;Jiang, Lingjuan;Jin, Ling N.;Kan, Yuhe;Kang, Da;Kou, Jin;Lam, Ka-Lung;Li, Changchao;Li, Chong;Li, Fuyi;Li, Liwei;Li, Miao;Li, Xin;Li, Ye;Li, Zheng-Tao;Liang, Jing;Lin, Yongxin;Liu, Changzhen;Liu, Danni;Liu, Fengqin;Liu, Jia;Liu, Tianrui;Liu, Tingting;Liu, Xinyuan;Liu, Yaqun;Liu, Bangyan;Liu, Minghao;Lou, Wenbo;Luan, Yaning;Luo, Yuanyuan;Lv, Hujie;Ma, Tengfei;Mai, Zongjiong;Mo, Jiayuan;Niu, Dongze;Pan, Zhuo;Qi, Heyuan;Shi, Zhanyao;Song, Chunjiao;Sun, Fuxiang;Sun, Yan;Tian, Sihui;Wan, Xiulin;Wang, Guoliang;W

    关键词:metagenome;microbiome;microbiota;pipeline;visualization

  • Largest genome assembly in Brassicaceae: retrotransposon-driven genome expansion and karyotype evolution in Matthiola incana

    作者:Chen, Daozong;Yang, Taihua;Chen, Haidong;Zhang, Xiaohan;Huang, Fan;Wan, Shubei;Lu, Zhanjun;Liu, Chao;Lei, Yong;Jiang, Huifang;Liao, Boshou;King, Graham J.;Lysak, Martin A.;Tan, Chen;Ge, Xianhong

    关键词:genome assembly;genome obesity;Lineage III;Hesperodae;Cruciferae;retrotransposons

  • EasyAmplicon 2: Expanding PacBio and Nanopore Long Amplicon Sequencing Analysis Pipeline for Microbiome

    作者:Luo, Hao;Bai, Defeng;Zhu, Zhihao;Yousuf, Salsabeel;Yang, Haifei;Xun, Jiani;Zeng, Meiyin;Wang, Yao;Gao, Yunyun;Peng, Kai;Xu, Shanshan;Zhou, Yuanping;Zhang, Tianyuan;Ma, Chuang;Hou, Huiyu;Wan, Xiulin;Zhou, Yang;Jia, Baolei;Huang, Shi;Gan, Renyou;Wen, Tao;Chen, Tong;Chen, Xia;Li, Xiaofang;Liu, Yong-Xin

    关键词:amplicon;microbiome;Nanopore;PacBio;Pipeline

  • The Microbiome Protocols eBook initiative: Building a bridge to microbiome research

    作者:Gao, Yunyun;Peng, Kai;Bai, Defeng;Bai, Xiao-Ye;Bi, Yujing;Chen, Anqi;Chen, Baodong;Chen, Feng;Chen, Juan;Chen, Lei;Chen, Tong;Chen, Wei;Cheng, Xu;Cheng, Yanfen;Cui, Jie;Dai, Jingjing;Dai, Junbiao;Dai, Zhaolai;Deng, Ye;Deng, Yi-Zhen;Ding, Wei;Fang, Zhencheng;Fu, Wei;Gao, Hanbing;Gu, Shaohua;Guo, Xue;Guo, Xuguang;Han, Dongfei;He, Lele;He, Yatao;Hou, Hui-Yu;Jia, Baolei;Jia, Gengjie;Jiao, Shuo;Jin, Wei;Ju, Feng;Ju, Zhicheng;Kong, Siyuan;Lan, Canhui;Li, Bing;Li, Da;Li, Diyan;Li, Jingdi;Li, Meng;Li, Qi;Li, Qiang;Li, Wen-Jun;Li, Xiaofang;Li, Xuemeng;Li, Yahui;Li, You-Gui;Liang, Zhibin;Ling, Ning;Liu, Fufeng;Liu, Qing;Liu, Shuang-Jiang;Lu, Hongye;Lu, Qi;Luo, Guangwe;Luo, Hao;Luo, Yuheng;Lyu, Hujie;Ma, Chuang;Ma, Liyuan;Ma, Tengfei;Ni, Jinfeng;Pang, Ziqin;Qiang, Xiaojing;Qin, Yuan;Qu, Qingyue;Ran, Chao;Ren, Shuqiang;Shang, Haitao;Song, Luyang;Sun, Linyang;Sun, Weimin;Tang, Liping;Tian, Jian;Wang, Kai;Wang, Mengzhi;W

    关键词:

  • Brassica Panache: A multi-species graph pangenome representing presence absence variation across forty-one Brassica genomes

    作者:Macnish, Tessa R.;Al-Mamun, Hawlader A.;Bayer, Philipp E.;Mcphan, Connor;Fernandez, Cassandria G. Tay;Upadhyaya, Shriprabha R.;Liu, Shengyi;Batley, Jacqueline;Parkin, Isobel A. P.;Sharpe, Andrew G.;Edwards, David

    关键词:

  • Single-cell RNA sequencing profiles reveal cell type-specific transcriptional regulation networks conditioning fungal invasion in maize roots

    作者:Cao, Yanyong;Ma, Juan;Han, Shengbo;Hou, Mengwei;Wei, Xun;Zhang, Xingrui;Zhang, Zhanyuan J.;Sun, Suli;Ku, Lixia;Tang, Jihua;Dong, Zhenying;Zhu, Zhendong;Wang, Xiaoming;Zhou, Xiaoxiao;Zhang, Lili;Li, Xiangdong;Long, Yan;Wan, Xiangyuan;Duan, Canxing

    关键词:maize stalk rot;scRNA-seq;Fusarium verticillioides;co-expression module;immune regulatory networks

  • easyMF: A Web Platform for Matrix Factorization-Based Gene Discovery from Large-scale Transcriptome Data

    作者:Ma, Wenlong;Chen, Siyuan;Qi, Yuhong;Song, Minggui;Zhai, Jingjing;Zhang, Ting;Xie, Shang;Wang, Guifeng;Ma, Chuang

    关键词:Gene discovery;Maize;Matrix factorization;Metagene;Seed genes;Transcriptome