数字农科院2.0

Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt

文献类型： 外文期刊

作者： Chen, Jie-Yin;Li, Nan-Yang;Ma, Xue-Feng;Wang, Jin-Long;Bao, Yu-Ming;Dai, Xiao-Feng;Huang, Jin-Qun;Liu, Chuan;Liu, Yong-Feng;Liang, Yong

作者机构：

关键词： Cotton;Verticillium wilt-resistant;Resistance gene analogues;RGA-gene-rich clusters;Verticillium dahliae response loci

期刊名称： BMC PLANT BIOLOGY

ISSN： 1471-2229

年卷期： 2015 年 15 卷

页码：

收录情况： SCI

摘要： Background: Gossypium raimondii is a Verticillium wilt-resistant cotton species whose genome encodes numerous disease resistance genes that play important roles in the defence against pathogens. However, the characteristics of resistance gene analogues (RGAs) and Verticillium dahliae response loci (VdRLs) have not been investigated on a global scale. In this study, the characteristics of RGA genes were systematically analysed using bioinformatics-driven methods. Moreover, the potential VdRLs involved in the defence response to Verticillium wilt were identified by RNA-seq and correlations with known resistance QTLs. Results: The G. raimondii genome encodes 1004 RGA genes, and most of these genes cluster in homology groups based on high levels of similarity. Interestingly, nearly half of the RGA genes occurred in 26 RGA-gene-rich clusters (Rgrcs). The homology analysis showed that sequence exchanges and tandem duplications frequently occurred within Rgrcs, and segmental duplications took place among the different Rgrcs. An RNA-seq analysis showed that the RGA genes play roles in cotton defence responses, forming 26 VdRLs inside in the Rgrcs after being inoculated with V. dahliae. A correlation analysis found that 12 VdRLs were adjacent to the known Verticillium wilt resistance QTLs, and that 5 were rich in NB-ARC domain-containing disease resistance genes. Conclusions: The cotton genome contains numerous RGA genes, and nearly half of them are located in clusters, which evolved by sequence exchanges, tandem duplications and segmental duplications. In the Rgrcs, 26 loci were induced by the V. dahliae inoculation, and 12 are in the vicinity of known Verticillium wilt resistance QTLs.

分类号：

  • 相关文献

[1]Cloning and Expression of the Chloroplast Copper/Zinc-Superoxide Dismutase Gene in Upland Cotton （Gossypium hirsutum L.）. Yu Shuxun,Fan Shuli,Song Meizhen. 2007

[2]2015年全国棉花种植品种监测报告——播种品种(系)344个;数量减少83个;减幅19.4%. 毛树春,冯璐,芦建华. 2016

[3]2015年中国与美国棉花种植品种比较. 冯璐,毛树春. 2016

[4]兰州百合病毒病原的DAS-ELISA检测. 王发林,古勤生,刘芬,彭斌,刘丽锋. 2003

[5]Isolation, characterisation and phylogenetic analysis of resistance gene analogues in a wild species of peach (Prunus kansuensis). Cao, K.,Wang, L. R.,Zhu, G. R.,Fang, W. Ch.,Chen, Ch. W.. 2011

[6]Histological and Ultrastructural Observation Reveals Significant Cellular Differences between Agrobacterium Transformed Embryogenic and Non-embryogenic Calli of Cotton. Shang, Hai-Hong,Liu, Chuan-Liang,Zhang, Chao-Jun,Li, Feng-Lian,Hong, Wei-Dong,Li, Fu-Guang.

[7]Genome-Scale Analysis Of The Wri-Like F.amily In Gossypium And F unctional Characterization Of Ghwri1A Controlling Triacylglycerol Content. Wang, Nuohan,Ma, Jianjiang,Liu, Guoyuan,Yu, Jiwen,Geng, Yanhui,Wu, Man,Li, Dan,Zhang, Jinfa,Zang, Xinshan,Pei, Wenfeng,Cui, Yupeng,Li, Xingli. 2018

[8]Genome-Wide Identification And Expression Analysis O.f The Metacaspase Gene F amily In Gossypium Species. Liu, Aiying,Zhang, Zhen,Jiang, Xiao,Zhang, Zhibin,Fan, Senmiao,Deng, Xiaoying,Ge, Qun,Lei, Kang,Gong, Juwu,Li, Junwen,Shi, Yuzhen,Yuan, Youlu,Huang, Jinyong,Gong, Wankui,Zou, Xianyan,Jia, Tingting,Zhang, Lipeng,Yuan, Youlu,Shang, Haihong,Fan, Liqiang,Zhang, Shuya,Shang, Haihong. 2019

[9]Gbs Mapping And Analysis Of G.enes Conserved Between Gossypium T omentosum And Gossypium Hirsutum Cotton Cultivars That Respond To Drought Stress At The Seedling Stage Of The Bc2F2 Generation. Hou, Yuqing,Magwanga, Richard Odongo,Lu, Pu,Kirungu, Joy Nyangasi,Magwanga, Richard Odongo,Xu, Yanchao,Hu, Yangguang,Zhou, Zhongli,Diouf, Latyr,Liu, Fang,Dong, Qi,Wang, Xingxing,Cai, Xiaoyan,Wang, Kunbo. 2018

[10]Molecular Characterisation And Functional Analysis O.f A Cytochrome P450 G ene In Cotton. Sun, Quan,Wang, Weina,Shi, Yuzhen,Sun, Quan,Wang, Weina,Zhang, Xiao,Zhou, Kexue,Yuan, Youlu,Zhang, Xiangrui,Mo, Jianchuan,Cheng, Jieru,Chu, Zongyan,Cai, Chaowei,Cai, Yingfan,Du, Xiongming,Long, Lu,Miao, Chen,Gao, Wei,Liu, Yujia. 2017

[11]Molecular Evolution And Stress And P.hytohormone Responsiveness Of Sut G enes In Gossypium Hirsutum. Liu, Yangai,Ma, Xiongfeng,Pei, Xiaoyu,Wang, Zhenyu,Song, Chengxiang,Sun, Kuan,Yang, Daigang,Zhou, Xiaojian,Zhang, Fei,Ren, Zhongying,He, Kunlun,Li, Wei. 2018

[12]Topical Shading Substantially Inhibits Vegetative B.ranching By Altering Leaf P hotosynthesis And Hormone Contents Of Cotton Plants. Li, Cundong,Dong, Hezhong,Kong, Xiangqiang,Kong, Xiangqiang,Dai, Jianlong,Dong, Hezhong,Dong, Hezhong,Li, Ting,Zhang, Yanjun,Li, Ting. 2019

[13]Rna-Sequencing, Physiological And Rnai Analyses P.rovide Insights Into The R esponse Mechanism Of The Abc-Mediated Resistance To Verticillium Dahliae Infection In Cotton. Peng, Renhai,Magwanga, Richard Odongo,Lu, Pu,Wang, Kunbo,Wang, Xingfen,Zhou, Zhongli,Xu, Yanchao,Wang, Xingxing,Cai, Xiaoyan,Dong, Qi,Dong, Qi,Hou, Yuqing,Magwanga, Richard Odongo,Liu, Fang,Kirungu, Joy Nyangasi,Ma, Zhiying. 2019

[14]Cloning, Sequence and Expression Analysis of Gossypium barbadense L.pepc Gene. Yu Jiwen,Yu Shuxun,Zhai Honghong,Fan Shuli,Song Meizhen,Zhang Jinfa. 2011

[15]Identification And Functional Analysis Of T.wo Cotton Orthologs Of M ax2 Which Control Shoot Lateral Branching. Zhao, Jinfeng,Fang, Jingjing,Zhao, Linlin,Li, Xueyong,Xing, Jin,Peng, Peng,Zhang, Wenhui,Long, Haixin,Zhao, Linlin,Liu, Weina. 2017

[16]Transcriptome Analysis And Identification Of G.enes Associated With Fruiting B ranch Internode Elongation In Upland Cotton. Shen, Qian,Zhang, Yongjiang,Pang, Chaoyou,Chen, Jing,Ju, Feiyan,Zhao, Xinhua,Liu, Shaodong,Ju, Feiyan,Zhang, Xiaomeng,Ma, Huijuan,Ge, Changwei,Zhang, Siping. 2019

[17]Dry Matter Accumulation And Phosphorus E.fficiency Response Of Cotton C ultivars To Phosphorus And Drought. Li Yongshen,Guan Xinyuan,Liu Ping,Liu Zhiyong,Wu Zhansheng,Wang Jun. 2017

[18]High Plant Density Inhibits Vegetative B.ranching In Cotton By A ltering Hormone Contents And Photosynthetic Production. Dong, Hezhong,Dong, Hezhong,Dong, Hezhong,Kong, Xiangqiang,Kong, Xiangqiang,Li, Ting,Li, Ting,Dai, Jianlong,Zhang, Yanjun. 2019

[19]A Genome-Wide Analysis Of The P.hospholipid: Diacylglycerol Acyltransferase Gene F amily In Gossypium. Geng, Xiaoli,Wu, Man,Zang, Xinshan,Wang, Nuohan,Pei, Wenfeng,Yu, Jiwen,Ma, Lei,Zhang, Jinfa. 2019

[20]Linkage And Association Mapping Reveals T.he Genetic Basis Of B rown Fibre (Gossypium Hirsutum). Gao, Bin,Lin, Zhongxu,Shen, Chao,Wen, Tianwang,Wu, Mi,You, Chunyuan,Zhang, Xianlong,Zhu, De. 2018

作者其他论文 更多>>