数字农科院2.0

Advance in genetical genomics

文献类型: 外文期刊

作者: Liu Xiu-Yan;Xie Zheng-Miao;Chen Hui-Zhe

作者机构:

关键词: microarray;expression QTL (eQTL);regulatory network

期刊名称: PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS

ISSN: 1000-3282

年卷期: 2006 年 33 卷 11 期

页码:

收录情况: SCI

摘要: Genetical genomics is combining of microarry technology and quantitative trait loci (QTL) analysis, mapping expression QTL (eQTL) in global level. It provides a novel procedure for revealing the molecular mechanism and regulatory network of complex trait. The conception and strategy of genetical genomics were brought forward by Janson and Nap in 2001. By now, genetical genomics has been applied on yeast, mouse, human and plant such as maize. These results indicated that the variation of expression level of genes is heritable complex trait. Expression QTLs are classified into cis-acting and trans-acting. Cis-acting eQTL is located on the same genomic region of the regulated gene, meaning the variation of mRNA level could be due to the polymorphism in the gene itself Trans-acting eQTL is located on other genomic region, meaning other gene controls the variation of mRNA level. The integration of eQTL results, gene function annotation and statistic analysis will not only more precisely identify candidate genes controlling complex traits and the expression of related genes, but also construct regulatory networks for these complex traits.

分类号:

  • 相关文献

[1]RNA-Seq-Based Transcriptome Profiling of Early Nitrogen Deficiency Response in Cucumber Seedlings Provides New Insight into the Putative Nitrogen Regulatory Network. Zhao, Wenchao,Yang, Xueyong,Yu, Hongjun,Jiang, Weijie,Sun, Na,Liu, Xiaoran,Liu, Xiaolin,Zhang, Xiaomeng,Wang, Yan,Gu, Xingfang,Zhao, Wenchao.

[2]STOP1 and STOP1-like proteins, key transcription factors to cope with acid soil syndrome. Li, Xinbo,Tian, Yifu. 2023

[3]Profiling of H3K4me3 and H3K27me3 and Their Roles in Gene Subfunctionalization in Allotetraploid Cotton. Aicen Zhang,Yangyang Wei,Yining Shi,Xiaojuan Deng,Jingjing Gao,Yilong Feng,Dongyang Zheng,Xuejiao Cheng,Zhaoguo Li,Tao Wang,Kunbo Wang,Fang Liu,Renhai Peng,Wenli Zhang. 2021

[4]Chromatin accessibility landscapes revealed the subgenome-divergent regulation networks during wheat grain development. Pei, Hongcui,Li, Yushan,Liu, Yanhong,Liu, Pan,Zhang, Jialin,Ren, Xueni,Lu, Zefu. 2023

[5]Integrative Analysis of RNA Expression and Regulatory Networks in Mice Liver Infected by Echinococcus multilocularis. Liu, Tingli,Li, Hong,Li, Yanping,Wang, Liqun,Chen, Guoliang,Pu, Guiting,Guo, Xiaola,Cho, William C.,Fasihi Harandi, Majid,Zheng, Yadong,Luo, Xuenong. 2022

[6]Genome-wide transcriptome analysis uncovers gene networks regulating fruit quality and volatile compounds in mango cultivar 'Tainong' during postharvest. Li L.,Yi P.,Sun J.,Tang J.,Liu G.,Bi J.,Teng J.,Hu M.,Yuan F.,He X.,Sheng J.,Xin M.,Li Z.,Li C.,Tang Y.,Ling D.. 2023

[7]A Comparative Transcriptome and Metabolome Combined Analysis Reveals the Key Genes and Their Regulatory Model Responsible for Glucoraphasatin Accumulation in Radish Fleshy Taproots. Xiaoman Li,Peng Wang,Jinglei Wang,Haiping Wang,Tongjin Liu,Xiaohui Zhang,Jiangping Song,Wenlong Yang,Chunhui Wu,Haohui Yang,Liwang Liu,Xixiang Li. 2022

[8]Identification of Key Genes Affecting Flavor Formation in Beijing-You Chicken Meat by Transcriptome and Metabolome Analyses. Kai Gai,Yu Ge,Dapeng Liu,He Zhang,Bailin Cong,Shihao Guo,Yizheng Liu,Kai Xing,Xiaolong Qi,Xiangguo Wang,Longfei Xiao,Cheng Long,Yong Guo,Xihui Sheng. 2023

[9]Comparative transcriptome analyses under individual and combined nutrient starvations provide insights into N/P/K interactions in rice. Senhuan Dai,Haicheng Wu,Huiying Chen,Zihui Wang,Xin Yu,Long Wang,Xianqing Jia,Cheng Qin,Yiyong Zhu,Keke Yi,Houqing Zeng. 2023

[10]Advances in Rice Seed Shattering. Hao Wu,Qi He,Quan Wang. 2023

[11]Single-cell transcriptome sequencing reveals the mechanism regulating rice plumule development. Zhu, Mingdong,Zhang, Meng,Huang, Kunyong,Lu, Feifei,Wang, Hong,Zhao, Shaolu,Yu, Yinghong,Tang, Shaoqing,Wu, Haining,Hu, Peisong,Wei, Xiangjin. 2024

[12]Chilling-induced peach flavor loss is associated with expression and DNA methylation of functional genes. Duan, Wenyi,Yang, Can,Cao, Xiangmei,Wei, Chunyan,Chen, Kunsong,Li, Xian,Zhang, Bo. 2023

[13]Light-mediated anthocyanin biosynthesis in rose petals involves a balanced regulatory module comprising transcription factors RhHY5, RhMYB114a, and RhMYB3b. Yan, Yuhang,Zhao, Jiaxing,Lin, Shengnan,Li, Mouliang,Liu, Jiayi,Raymond, Olivier,Vergne, Philippe,Kong, Weilong,Wu, Quanshu,Zhang, Xiaoni,Bao, Manzhu,Bendahmane, Mohammed,Fu, Xiaopeng. 2023

[14]Roles of NAC transcription factors in cotton. Yuewei Xu,Yunlei Zhao,Wei Chen,Xiaohui Sang,Pei Zhao,Hongmei Wang. 2024

[15]CsCBF1/CsZHD9-CsMADS27, a critical gene module controlling dormancy and bud break in tea plants. Hao, Xinyuan,Tang, Junwei,Chen, Yao,Huang, Chao,Zhang, Weifu,Liu, Ying,Yue, Chuan,Wang, Lu,Ding, Changqing,Dai, Wenhao,Yang, Yajun,Horvath, David P.,Wang, Xinchao. 2024

[16]Regulatory networks of coresident subgenomes fiber cell in cotton. Yang, Lan,Qin, Wenqiang,Wei, Xi,Liu, Rui,Yang, Jiaxiang,Wang, Zhi,Yan, Qingdi,Zhang, Yihao,Hu, Wei,Han, Xiao,Gao, Chenxu,Zhan, Jingjing,Gao, Baibai,Ge, Xiaoyang,Li, Fuguang,Yang, Zhaoen. 2024

[17]Transcriptome analysis reveals the mechanism of peach fruit browning during cold storage. Badrunnesa, Akhi,Zhan, Wenduo,Duan, Wenyi,Meng, Junren,Li, Ang,Yao, Zhenyu,Niu, Liang,Pan, Lei,Sun, Shihang,Cui, Guochao,Zeng, Wenfang. 2025

[18]Revealing the Molecular Regulatory Mechanism of Flavonoid Accumulation in Tender Leaves of Tea Plants by Transcriptomic and Metabolomic Analyses. Ruiyang Shan,Yongheng Zhang,Xiaomei You,Xiangrui Kong,Yazhen Zhang,Xinlei Li,Lu Wang,Xinchao Wang,Changsong Chen. 2025

[19]Plant STOP1 family: a helmsman in the soil multiple stress adaptation. Zhang, Shurui,Wang, Yanlin,Lu, Yao,Yuan, Shuai,Wang, Long,Xu, Lei,Yi, Keke,Jia, Xianqing. 2025

[20]Identification and analysis of miRNA-mRNA regulatory networks of ZM-4 (Malus zumi) in response to salt stress. Liu, Zhao,Gao, Yuan,Guo, Hanxin,Shang, Wei,Wang, Kun,Sun, Simiao,Wang, Lin,Tian, Wen,Li, Zichen,Sun, Yanming,Li, Lianwen,Niu, Jianxin,Wang, Dajiang. 2025

作者其他论文 更多>>