数字农科院2.0

Genome‐Wide Characterization of WRKY Transcription Factors Revealed Gene Duplication and Diversification in Populations of Wild to Domesticated Barley

文献类型： 外文期刊

作者： Jinhong Kan; Guangqi Gao; Qiang He; Qian Gao; Congcong Jiang; Sunny Ahmar; Jun Liu; Jing Zhang; Ping Yang

关键词： barley; WRKY transcription factors; diversity; domestication; adaptation

期刊名称： INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ISSN： 1661-6596

年卷期： 2021 年

页码：

收录情况： JCR（2021版）

摘要： The WRKY transcription factors (WRKYs) are known for their crucial roles in biotic and abiotic stress responses, and developmental and physiological processes. In barley, early studies revealed their importance, whereas their diversity at the population scale remains hardly estimated. In this study, 98 HsWRKYs and 103 HvWRKYs have been identified from the reference genome of wild and cultivated barley, respectively. The tandem duplication and segmental duplication events from the cultivated barley were observed. By taking advantage of early released exome‐captured sequencing datasets in 90 wild barley accessions and 137 landraces, the diversity analysis uncovered synonymous and non‐synonymous variants instead of loss‐of‐function mutations that had occurred at all WRKYs. For majority of WRKYs, the haplotype and nucleotide diversity both decreased in cultivated barley relative to the wild population. Five WRKYs were detected to have undergone selection, among which haplotypes of WRKY9 were enriched, correlating with the geographic collection sites. Collectively, profiting from the state‐of‐the‐art barley genomic resources, this work represented the characterization and diversity of barley WRKY transcription factors, shedding light on future deciphering of their roles in barley domestication and adaptation.

分类号：

  • 相关文献

[1]利用但基因组扩增法对马传染性贫血病毒疫苗株异质性的分析. 韦华冕,王雪峰,王珊珊,杜承,刘海芳,刘强,周建华. 2012

[2]Isolation and functional characterization of HvDREB1-a gene encoding a dehydration-responsive element binding protein in Hordeum vulgare. Xu, Zhao-Shi,Ni, Zhi-Yong,Li, Zhi-Yong,Li, Lian-Cheng,Chen, Ming,Gao, Dong-Yao,Yu, Xiu-Dao,Liu, Pei,Ma, You-Zhi.

[3]Atwakl10, a cell wall associated receptor-like kinase, negatively regulates leaf senescence in arabidopsis thaliana. Li Lu,Li Kui,Ali Akhtar,Guo Yongfeng. 2021

[4]Parallel Speciation Of Wild Rice A.ssociated With Habitat Shifts. Zhang, Fu-Min,Zhang, Fu-Min,Zeng, Hua-Zhong,Xu, Xun,Xu, Xun,Zheng, Xiao-Ming,Zou, Xin-Hui,Zou, Xin-Hui,Zhou, Lian,Zhou, Hai-Fei,Zhou, Lian,Geng, Mu-Fan,Cai, Zhe,Ge, Song,Guo, Ya-Long,Guo, Jie,Geng, Mu-Fan,Du, Yu-Su,Chen, Wen-Li,Chen, Cheng-Bin,Cai, Zhe,Ge, Song,Du, Yu-Su,Guo, Ya-Long,Meng, Qing-Lin,Meng, Qing-Lin,Wei, Xing-Hua,Liu, Rong,Wang, Mei-Xia,Wang, Mei-Xia,Ren, Ning-Ning,Ren, Ning-Ning,Liang, Yun-Tao,Jing, Chun-Yan,Jing, Chun-Yan,Huang, Lei. 2019

[5]Characterization Of Genetic Diversity And Genome-Wide Association Mapping Of Three Agronomic Traits In Qingke Barley (Hordeum Vulgarel.) In The Qinghai-Tibet Plateau. Dawa, Dondrup,Wang, Jiankang,Guo, Ganggang,Nyema, Tashi,Dol, Kar,Chen, Panpan,Gao, Liyun,Li, Zhiyong,Lhundrup, Namgyal,Li, Huihui,Li, Huihui,Zhang, Jing,Chemi, Wangmo. 2020

[6]Oscol16, Encoding A Constans-Like Protein, R.epresses Flowering By Up R egulating Ghd7 Expression In Rice. Wu, WX, Zheng, XM, Chen, DB, Zhang, YX, Ma, WW, Zhang, H, Sun, LP, Yang, ZF, Zhao, CD, Zhan, XD, Shen, XH, Yu, P, Fu, YP, Zhu, SS, Cao, LY, Cheng, SH. 2017

[7]The Impact Of Weather Variations O.n Maize Yields And H ousehold Income: Income Diversification As Adaptation In Rural China. Ma, JL, Maystadt, JF. 2017

[8]The Genome Landscape Of Tibetan S.heep Reveals Adaptive Introgression F rom Argali And The History Of Early Human Settlements On The Qinghai-Tibetan Plateau. Hu, XJ, Yang, J, Xie, XL, Lv, FH, Cao, YH, Li, WR, Liu, MJ, Wang, YT, Li, JQ, Liu, YG, Ren, YL, Shen, ZQ, Wang, F, Hehua, ER, Han, JL, Li, MH. 2019

[9]Amino Acid Utilization May Explain W.hy Bemisia Tabaci Q A nd B Differ In Their Performance On Plants Infected By The Tomato Yellow Leaf Curl Virus. Guo, LT, Su, Q, Yin, J, Yang, ZZ, Xie, W, Wang, SL, Wu, QJ, Cui, HY, Zhang, YJ. 2019

[10]Identification of loci controlling adaptation in Chinese soya bean landraces via a combination of conventional and bioclimatic GWAS. . 2020

[11]The Impact Of Snowstorms, Droughts And Locust Outbreaks On Livestock Production In Inner Mongolia: Anticipation And Adaptation To Environmental Shocks. Crook, DR, Robinson, BE, Li, P. 2020

[12]Natural Variation And Crispr/Cas9-Mediated Mutation Ingmprr37Affect Photoperiodic Flowering And Contribute To Regional Adaptation Of Soybean. Wang, LW, Sun, S, Wu, TT, Liu, LP, Sun, XG, Cai, YP, Li, JC, Jia, HC, Yuan, S, Chen, L, Jiang, BJ, Wu, CX, Hou, WS, Han, TF. 2020

[13]Identification Of Loci Controlling Adaptation I.n Chinese Soya Bean L andraces Via A Combination Of Conventional And Bioclimatic Gwas. Li, YH, Li, DL, Jiao, YQ, Schnable, JC, Li, YF, Li, HH, Chen, HZ, Hong, HL, Zhang, T, Liu, B, Liu, ZX, You, QB, Tian, Y, Guo, Y, Guan, RX, Zhang, LJ, Chang, RZ, Zhang, ZW, Reif, J, Zhou, XA, Schnable, PS, Qiu, LJ. 2019

[14]Genomic Diversity, Population Structure, And Signature Of Selection In Five Chinese Native Sheep Breeds Adapted To Extreme Environments. Abied, A, Bagadi, A, Bordbar, F, Pu, YB, Augustino, SMA, Xue, XL, Xing, F, Gebreselassie, G, Han, JL, Mwacharo, JM, Ma, YH, Zhao, QJ. 2020

[15]Genome-Wide Scan Reveals Genetic Divergence A.nd Diverse Adaptive Selection I n Chineselocal Cattle. Xu, LY, Yang, L, Zhu, B, Zhang, WG, Wang, ZZ, Chen, Y, Zhang, LP, Gao, X, Gao, HJ, Liu, GE, Li, JY. 2019

[16]Malate-Dependent Carbon Utilization Enhances Central M.etabolism And Contributes To B iological Fitness Of Laribacter Hongkongensis Via Crp Regulation. Xiong, LF, Chan, E, Teng, JLL, Liu, SG, Lau, SKP, Woo, PCY. 2019

[17]Tandem Repeats Contribute To Coding S.equence Variation In Bumblebees ( Hymenoptera: Apidae). Zhao, XM, Su, L, Schaack, S, Sadd, BM, Sun, C. 2018

[18]Mouse Adaptation Of The H9N2 Avian Influenza Virus Causes The Downregulation Of Genes Related To Innate Immune Responses And Ubiquitin-Mediated Proteolysis In Mice. Guo, J, Gao, XX, Liu, BT, Li, YB, Liu, WQ, Lu, JB, Liu, C, Xue, R, Li, XY. 2020

[19]Characterization of Genetic Diversity and Genome-Wide Association Mapping of Three Agronomic Traits in Qingke Barley (Hordeum Vulgare L.) in the Qinghai-Tibet Plateau. . 2020

[20]The E2 Glycoprotein Is Necessary B.ut Not Sufficient For T he Adaptation Of Classical Swine Fever Virus Lapinized Vaccine C-Strain To The Rabbit. Li, YF, Xie, LB, Zhang, LK, Wang, X, Li, C, Han, YY, Hu, SP, Sun, Y, Li, S, Luo, YZ, Liu, LH, Munir, M, Qiu, HJ. 2018

作者其他论文 更多>>