数字农科院2.0

Comparative genomic and transcriptomic analyses provide new insight into symbiotic host specificity

文献类型： 外文期刊

作者： Songli Yuan;Piao Leng;Yong Feng;Fuxiao Jin;Hui Zhang;Chanjuan Zhang;Yi Huang;Zhihui Shan;Zhonglu Yang;Qingnan Hao;Shuilian Chen;Limiao Chen;Dong Cao;Wei Guo;Hongli Yang;Haifeng Chen;Xinan Zhou

作者机构：

关键词： Genomics;Omics;Transcriptomics

期刊名称： iScience

ISSN： 2589-0042

年卷期： 2024 年 27 卷 7 期

页码：

收录情况： SCIE（2024版）

摘要： Host specificity plays important roles in expanding the host range of rhizobia, while the genetic information responsible for host specificity remains largely unexplored. In this report, the roots of four symbiotic systems with notable different symbiotic phenotypes and the control were studied at four different post-inoculation time points by RNA sequencning (RNA-seq). The differentially expressed genes (DEGs) were divided into “found only in soybean or Lotus,” “only expressed in soybean or Lotus,” and “expressed in both hosts” according to the comparative genomic analysis. The distributions of enriched function ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways vary significantly in different symbiotic systems. Host specific genes account for the majority of the DEGs involved in response to stimulus, associated with plant-pathogen interaction pathways, and encoding resistance (R) proteins, the symbiotic nitrogen fixation (SNF) proteins and the target proteins in the SNF-related modules. Our findings provided molecular candidates for better understanding the mechanisms of symbiotic host-specificity.

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