数字农科院2.0

The Spartina alterniflora genome sequence provides insights into the salt-tolerance mechanisms of exo-recretohalophytes

文献类型： 外文期刊

作者： Chen, Shoukun;Du, Tingting;Huang, Zhangping;He, Kunhui;Yang, Maogeng;Gao, Shang;Yu, Tingxi;Zhang, Hao;Li, Xiang;Chen, Shihua;Liu, Chun-Ming;Li, Huihui

作者机构：

关键词： Spartina alterniflora;genome;salinity adaptation;evolution;glutathione metabolism

期刊名称： PLANT BIOTECHNOLOGY JOURNAL

ISSN： 1467-7644

年卷期： 2024 年

页码：

收录情况： SCIE（2024版）

摘要： Spartina alterniflora is an exo-recretohalophyte Poaceae species that is able to grow well in seashore, but the genomic basis underlying its adaptation to salt tolerance remains unknown. Here, we report a high-quality, chromosome-level genome assembly of S. alterniflora constructed through PacBio HiFi sequencing, combined with high-throughput chromosome conformation capture (Hi-C) technology and Illumina-based transcriptomic analyses. The final 1.58 Gb genome assembly has a contig N50 size of 46.74 Mb. Phylogenetic analysis suggests that S. alterniflora diverged from Zoysia japonica approximately 21.72 million years ago (MYA). Moreover, whole-genome duplication (WGD) events in S. alterniflora appear to have expanded gene families and transcription factors relevant to salt tolerance and adaptation to saline environments. Comparative genomics analyses identified numerous species-specific genes, significantly expanded genes and positively selected genes that are enriched for 'ion transport' and 'response to salt stress'. RNA-seq analysis identified several ion transporter genes including the high-affinity K+ transporters (HKTs), SaHKT1;2, SaHKT1;3 and SaHKT1;8, and high copy number of Salt Overly Sensitive (SOS) up-regulated under high salt conditions, and the overexpression of SaHKT2;4 in Arabidopsis thaliana conferred salt tolerance to the plant, suggesting specialized roles for S. alterniflora to adapt to saline environments. Integrated metabolomics and transcriptomics analyses revealed that salt stress activate glutathione metabolism, with differential expressions of several genes such as gamma-ECS, GSH-S, GPX, GST and PCS in the glutathione metabolism. This study suggests several adaptive mechanisms that could contribute our understanding of evolutional basis of the halophyte.

分类号：

  • 相关文献

[1]The Sinocyclocheilus cavefish genome provides insights into cave adaptation. Yang, Junxing,Jiang, Wansheng,Pan, Xiaofu,Wang, Xiaoai,Chen, Xiaoyong,Zheng, Lanping,Chen, Xiaoli,Bai, Jie,Fang, Dongming,Qiu, Ying,Yuan, Hui,Bian, Chao,Lu, Jiang,He, Shiyang,Zhang, Yaolei,You, Xinxin,Wang, Yongsi,Sun, Ying,Mao, Danqing,Liu, Yong,Fan, Guangyi,Zhang, He,Zhang, Xinhui,Wang, Jintu,Chen, Jieming,Ruan, Zhiqiang,Li, Jia,Yu, Hui,Peng, Chao,Wang, Jian,Yang, Huanming,Wang, Jun,Xu, Xun,Bai, Jie,Qiu, Ying,Bian, Chao,You, Xinxin,Zhang, Xinhui,Chen, Jieming,Ruan, Zhiqiang,Li, Jia,Yu, Hui,Peng, Chao,Bai, Jie,Whitten, Tony,Qiu, Ying,Sun, Ying,Cheng, Le,Fang, Dongming,Lu, Jiang,He, Shiyang,Li, Jia,Yu, Hui,Zhang, Yaolei,Cheng, Le,Ma, Xingyu,Xu, Junmin,Shi, Qiong,Ma, Xingyu,Xu, Junmin,Shi, Qiong,He, You,Xu, Zhengfeng,Xu, Pao,Wang, Jian,Yang, Huanming,Wang, Jun. 2016

[2]Isolation, characterization and phylogenetic analysis of the resistance gene analogues (RGAs) in banana (Musa spp.). Pei, Xinwu,Li, Shengjun,Jiang, Ying,Zhang, Yongqiang,Wang, Zhixing,Jia, Shirong.

[3]Naturally occurring reassortant infectious bursal disease virus in northern China. Lu, Zhen,Zhang, Lizhou,Wang, Nian,Chen, Yuming,Gao, Li,Wang, Yongqiang,Gao, Honglei,Gao, Yulong,Li, Kai,Qi, Xiaole,Wang, Xiaomei,Wang, Xiaomei.

[4]Origin and evolution of fatty acid desaturase genes in oil crop Brassica napus. Zhao W.,Qian L.,Guan M.,Liu J.,Guan C.. 2022

[5]Editorial: Evolution of crop genomes and epigenomes. Hai Du,Wei Hu,Viktor Demko,梁哲. 2022

[6]Gene Duplication Analysis Reveals No A.ncient Whole Genome Duplication B ut Extensive Small-Scale Duplications During Genome Evolution And Adaptation Of Schistosoma Mansoni. Wang, S,Zhu, XQ,Cai, XP. 2017

[7]A chromosome-level genome assembly for the rabbit tapeworm Taenia pisiformis. Lixia Pu,Zhongli Liu,Aijiang Guo,Bin Wu,Guo hua Liu,Shaohua Zhang,Xiaola Guo,Xiaolu Li,Jianbo Jian,Xuepeng Cai,Shuai Wang. 2022

[8]The Idesia polycarpa genome provides insights into its evolution and oil biosynthesis. Yi Zuo,Hongbing Liu,Bin Li,Hang Zhao,Xiuli Li,Jiating Chen,Lu Wang,Qingbo Zheng,Yuqing He,Jiashuo Zhang,Minxian Wang,Chengzhi Liang,Lei Wang. 2024

[9]Discovery of endogenous retroviruses in the genome of the red panda (Ailurus fulgens). Bao, Yingying,Mao, Lichen,Ndjekadom, Alfred,Shi, Wenhui,Zhou, Chenglin,Xu, Juan,Wang, Xiaochun,Liu, Yuwei,Yang, Shixing,Ji, Likai,Shan, Tongling,Zhang, Wen,Shen, Quan. 2025

[10]Chromosome-level genome assembly of Dendrothrips minowai and genomic analysis highlights distinct adaptations to high polyphenols in tea plants. Xiu, Chunli,Zhao, Dehai,Zhang, Jiahui,Liu, Haitao,Wang, Yusheng,Liu, Hangwei,Cai, Xiaoming,Luo, Zongxiu,Bian, Lei,Fu, Nanxia,Zhou, Li,Chen, Zongmao,Li, Zhaoqun. 2025

[11]Large-scale Genome Analyses Provide Insights into Hymenoptera Evolution. Chun He,Yi Yang,Xianxin Zhao,Junjie Li,Yuting Cai,Lijia Peng,Yuanyuan Liu,Shijiao Xiong,Yang Mei,Zhichao Yan,Jiale Wang,Shan Xiao,Ziwen Teng,Xueke Gao,Hui Xue,Qi Fang,Gongyin Ye,Xinhai Ye. 2025

[12]Duckweed Evolution: from Land back to Water. Yang Fang,Xueping Tian,Yanling Jin,Anping Du,Yanqiang Ding,Zhihua Liao,Kaize He,Yonggui Zhao,Ling Guo,Yao Xiao,Yaliang Xu,Shuang Chen,Yuqing Che,Li Tan,Songhu Wang,Jiatang Li,Zhuolin Yi,Lanchai Chen,Leyi Zhao,Fangyuan Zhang,Guoyou Li,Jinmeng Li,Qinli Xiong,Yongmei Zhang,Qing Zhang,Xuan Hieu Cao,Hai Zhao. 2025

[13]四种甘蓝雄性不育类型基因芯片表达谱分析. 康俊根,王晓武,方智远. 2007

[14]Inhibition Of Harmful Algae Phaeocystis Globosa And Prorocentrum Donghaiense By Extracts Of Coastal Invasive Plant Spartina Alterniflora. Li, Chao,Xu, Caicai,Ge, Zhiwei,Xiao, Xi,Xiao, Xi,Wan, Fanghao. 2019

[15]Different cellular mechanism of imidacloprid and acetamiprid by a combined targeted lipidomics and metabolomics approach in Neuro-2a cells. Xinlu Wang,Jing Qiu,Yanyang Xu,Yecan Pan,Hongping Chen,Qi Jia,Yongzhong Qian. 2022

[16]Soil Organic Carbon Stabilization Mechanisms I.n A Subtropical Mangrove A nd Salt Marsh Ecosystems. Sun, HM, Jiang, J, Cui, LN, Feng, WT, Wang, YG, Zhang, JC. 2019

[17]Comparison of muscle metabolomics between two Chinese horse breeds. Sihan Meng,Yanli Zhang,Shipeng Lv,Zhengkai Zhang,Xuexue Liu,Lin Jiang. 2023

[18]Deep learning-enabled discovery and characterization of HKT genes in Spartina alterniflora. Yang, Maogeng,Chen, Shoukun,Huang, Zhangping,Gao, Shang,Yu, Tingxi,Du, Tingting,Zhang, Hao,Li, Xiang,Liu, Chun-Ming,Chen, Shihua,Li, Huihui. 2023

[19]Integration of multi-omics reveals the important role of the BBS10 gene in reproduction. Zhang, Guoqing,Chu, Mingxing,Wang, Shoufeng,Feng, Pingjie,Shi, Jianxin,Li, Hao,Li, Xinyue,Pan, Zhangyuan. 2024

[20]Comprehensive analysis of the Spartina alterniflora WD40 gene family reveals the regulatory role of SaTTG1 in plant development. Maogeng Yang,Shoukun Chen,Jiahui Geng,Shuqiang Gao,Shihua Chen,Huihui Li. 2024

作者其他论文 更多>>