数字农科院2.0

Temporal transcriptome analysis under salt stress reveals disrupted rhythmic expression and altered homoeolog usage in allopolyploid cotton

文献类型： 外文期刊

作者： Gao, Zhan;Niu, Ruoyu;Li, Dongming;Xiong, Xianpeng;Zhang, Xianliang;Lv, Yulong;Li, Yu;Ma, Xiongfeng;Zhu, De;Hu, Guanjing

作者机构：

关键词： Gossypium hirsutum;Salt stress;Time-series transcriptomics;Rhythmic expression;Transcriptional regulation;Homoeolog expression bias

期刊名称： INDUSTRIAL CROPS AND PRODUCTS

ISSN： 0926-6690

年卷期： 2026 年 239 卷

页码：

收录情况： SCIE（2025版） ; ; EI（2025版）

摘要： Excessive soil salinity poses a significant threat to plant growth and agricultural production. However, the dynamic transcriptional processes underlying plant salt stress response, particularly the transition from transient to steady-state responses and the involvement of rhythmic regulation, remain poorly understood. Here we conducted phenotypic and transcriptomic analyses of upland cotton (Gossypium hirsutum) under salt stress, generating a high-resolution temporal expression profile. Our results identified distinct stress perception and homeostasis responsive phases of gene regulation and revealed a substantial disruption of rhythmic gene expression under stress. A large proportion of rhythmically expressed genes (REGs) lost rhythmicity, with significant alterations in expression phase, period and amplitude. Furthermore, we found that salt stress induced notable shifts in homoeolog expression bias (HEB), suggesting a role for subgenome regulation in environmental plasticity. Collectively, our findings distinguish short-term from long-term adaptive changes and underscore the interplay between stress-induced and rhythmic-regulated transcription. This work provides valuable insights into the temporal and regulatory complexity of salt stress in cotton.

分类号：

  • 相关文献

[1]An evolutionarily conserved histone modification H3K37ac activates gene transcription in response to salt stress in rice. Ma, Xuan,Chen, Zhengting,Xiao, Guiyu,Huang, Jiada,Lin, Lihao,Xu, Qiutao. 2025

[2]A Comprehensive Identification and Function Analysis of Serine/Arginine-Rich (SR) Proteins in Cotton (Gossypium spp.). Fei Wei,Pengyun Chen,Hongliang Jian,Lu Sun,Xiaoyan Lv,Hengling Wei,Hantao Wang,Tingli Hu,Liang Ma,Xiaokang Fu,Jianhua Lu,Shiyun Li,Shuxun Yu. 2022

[3]A systematic analysis of the phloem protein 2 (PP2) proteins in Gossypium hirsutum reveals that GhPP2-33 regulates salt tolerance. Fei Wei,Pengyun Chen,Hongliang Jian,Xiaohao Guo,Xiaoyan Lv,Boying Lian,Mengxi Sun,Li An,Xinyu Dang,Miaoqian Yang,Hongmei Wu,Nan Zhang,Aimin Wu,Hantao Wang,Liang Ma,Xiaokang Fu,Jianhua Lu,Shuxun Yu,Hengling Wei. 2023

[4]GhMAPK3, a mitogen-activated protein kinase, enhance salt and drought tolerance in cotton (Gossypium hirsutum). Hongliang Jian,Salisu Bello Sadau,Fei Wei,Adeel Ahmad,Zhengying Lu,Liang Ma,Xiaokang Fu,Nan Zhang,Jianhua Lu,Guo Yin,Hantao Wang,Hengling Wei. 2024

[5]GhPMP3-2 positively regulates response to salt stress in upland cotton (Gossypium hirsutum L.). Fei Wei,Hongliang Jian,Pengyun Chen,Xiaohao Guo,Wei Jiang,Jingjing Zhang,Nan Zhang,Hang Xu,Jianhua Lu,Xiaokang Fu,Liang Ma. 2025

[6]陆地棉开花相关基因GhFLP1的克隆与功能验证. 张盼,范术丽,宋美珍,庞朝友,魏恒玲,喻树迅. 2016

[7]Asymmetric epigenetic modification and homoeolog expression bias in the establishment and evolution of allopolyploid Brassica napus. Mengdi Li,Weiqi Sun,Fan Wang,Xiaoming Wu,Jianbo Wang. 2021

[8]Homoeolog Expression Bias And Expression Level Dominance (Eld) In Four Tissues Of Natural Allotetraploid Brassica Napus. Li, MD, Wang, RH, Wu, XM, Wang, JB. 2020

[9]Transcriptome Analysis of Developing Wheat Grains at Rapid Expanding Phase Reveals Dynamic Gene Expression Patterns. Jiantao Guan,Zhenyu Wang,Shaoshuai Liu,Xingchen Kong,Fang Wang,Guoliang Sun,Shuaifeng Geng,Long Mao,Peng Zhou,Aili Li. 2022

[10]Transgressive and subgenome expression level dominance and co-expression network analyses at the early fiber development in allopolyploid Gossypium. Aishuang Xing,Xiaomeng Zhang,Jingjing Wang,Shoupu He,Mian Faisal Nazir,Xiaoyang Wang,Xiuxiu Wang,Ru Yang,Haobo Zhang,Guoyong Fu,Baojun Chen,Zhen Peng,Xiongming Du. 2024

[11]Evolutionary Dynamics of Chromatin Structure and Duplicate Gene Expression in Diploid and Allopolyploid Cotton. Guanjing Hu,Corrinne E. Grover,Daniel L. Vera,Pei Yau Lung,Senthil B. Girimurugan,Emma R. Miller,Justin L. Conover,Shujun Ou,Xianpeng Xiong,De Zhu,Dongming Li,Joseph P. Gallagher,Joshua A. Udall,Xin Sui,Jinfeng Zhang,Hank W. Bass,Jonathan F. Wendel. 2024

[12]Changes of antioxidative enzymes and cell membrane osmosis in tomato colonized by arbuscular mycorrhizae under NaCl stress. ZhongQun, He,ChaoXing, He,ZhiBin, Zhang,ZhiRong, Zou,HuaiSong, Wang.

[13]A novel DREB transcription factor from Halimodendron halodendron leads to enhance drought and salt tolerance in Arabidopsis. Ma, J. -T.,Wang, Z. -L.,Ma, J. -T.,Yin, C. -C.,Guo, Q. -Q.,Zhou, M. -L.,Wu, Y. -M.,Guo, Q. -Q..

[14]Characterization of an inducible C2H2-type zinc finger transcription factor VuSTOP1 in rice bean (Vigna umbellata) reveals differential regulation between low pH and aluminum tolerance mechanisms. Fan, Wei,Lou, He Qiang,Gong, Yu Long,Cao, Meng Jie,Liu, Yu,Yang, Jian Li,Zheng, Shao Jian,Fan, Wei,Liu, Mei Ya.

[15]Characterization of VuMATE1 Expression in Response to Iron Nutrition and Aluminum Stress Reveals Adaptation of Rice Bean (Vigna umbellata) to Acid Soils through Cis Regulation. Liu, Meiya,Xu, Jiameng,Lou, Heqiang,Yang, Jianli,Zheng, Shaojian,Liu, Meiya,Fan, Wei. 2016

[16]Coordinate involvement of Nodal-dependent inhibition and Wnt-dependent activation in the maintenance of organizer-specific bmp2b in zebrafish. Xue, Yu,Zhang, Wenjuan,Chen, Canbin,Xu, Jingjin,Pan, Yutian,Xing, Cencan,Xing, Cencan,Meng, Anming.

[17]Transcriptional regulation of the gene for prothoracicotropic hormone in the silkworm, Bombyx mori. Wei, Zhao-Jun,Yu, Miao,Hong, Gui-Yun,Jiang, Shao-Tong,Tang, Shun-Ming,Yi, Yong-Zhu.

[18]Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression. Li, Shuyu,Wang, Bao,Liu, Xiaoqiang,Zhang, Jie,Wang, Jun,Sun, Jiaqiang,Li, Chuanyou,Zhao, Bingran,Yuan, Dingyang,Duan, Meijuan,Tang, Li,Yuan, Longping,Qian, Qian,Liu, Zhao,Feng, Yu-Qi.

[19]Protein-DNA interactions in the promoter region of the gene encoding diapause hormone and pheromone biosynthesis activating neuropeptide of the cotton bollworm, Helicoverpa armigera. Hong, B,Zhang, ZF,Tang, SM,Yi, YZ,Zhang, TY,Xu, WH.

[20]Anthocyanin biosynthesis regulation of DhMYB2 and DhbHLH1 in Dendrobium hybrids petals. Li, Chonghui,Ding, Ling,Huang, Mingzhong,Huang, Surong,Yang, Guangsui,Yin, Junmei,Qiu, Flan,Ding, Ling,Li, Chonghui,Huang, Mingzhong,Huang, Surong,Yang, Guangsui,Yin, Junmei.

作者其他论文 更多>>