数字农科院2.0

A comparison of Chinese soybean collection with European soybean collections on genetic diversity by genome-wide scan

文献类型： 外文期刊

作者： Xu, Jiangyuan;Yao, Xindong;Lu, Yuqing;Leopold, Rittler;Gu, Yongzhe;Yuan, Ming;Zhang, Yong;Sun, Rujian;Xue, Yongguo;Liu, Yeli;Han, Dezhi;Wang, Jinxing;Gao, Huawei;Liu, Zhangxiong;Qiu, Lijuan

作者机构：

关键词： Chinese soybean;European soybean;Genetic diversity;Selective sweep analysis;Selected region

期刊名称： GENETIC RESOURCES AND CROP EVOLUTION

ISSN： 0925-9864

年卷期： 2025 年

页码：

收录情况： SCIE（2025版）

摘要： Although soybeans (Glycine max [L.] Merr.) originated in China and have spread worldwide, artificial selection for different breeding targets in various regions and enabling them to adapt to different environments can alter the genetic makeup of soybeans. The introduction and utilization of foreign germplasm is an effective way to expand the genetic basis of cultivars, but there are few reports in the differences in genetic diversity of soybean germplasm between China and Europe. To better compare the genetic diversity between Chinese and European germplasms, we selected soybean germplasm from northeastern China due to its comparable latitude with Europe. A total of 797 European cultivars, 804 Chinese elite cultivars and landraces, and 54 Chinese wild types were genotyped using the ZDX1 array. Selective sweep analysis was then employed to assess genetic diversity of the Chinese and European collections. An analysis of 158,315 SNPs demonstrated a higher genetic diversity in Chinese wild soybeans and cultivars than that of European. Moreover, population structure results indicated that European cultivars possess partial Chinese ancestry. The joint analysis of pi, FST and XP-CLR identified 140 selected regions between Chinese and European germplasms in total. Specifically, the Chinese collection had 124 regions distributed across 15 chromosomes, among which 41 previously reported quantitative trait loci (QTLs) were primarily associated with grain yield, flowering and maturity, and seed quality. In contrast, the European collection had 16 regions spread over 10 chromosomes, with 7 QTLs predominantly linked to yield, flowering time, and seed quality. The previously reported QTLs within these selected regions highlight the significant differences in breeding targets across regions. The result in this study provides a scientific basis for both Chinese and European breeders to exchange and utilize these germplasm resources.

分类号：

  • 相关文献

[1]A significant quantitative trait locus on chromosome Z and its impact on egg production traits in seven maternal lines of meat-type chicken. Jiqiang Ding,Fan Ying,Qinghe Li,Gaomeng Zhang,Jin Zhang,Ranran Liu,Maiqing Zheng,Jie Wen,Guiping Zhao. 2022

[2]Genomic Analyses Reveal Selection Footprints I.n Rice Landraces Grown U nder On-Farm Conservation Conditions During A Short-Term Period Of Domestication. Cui, Di,Qiao, Yongli,Li, Ruiqiang,Xu, Furong,Koh, Hee:Jong,Han, Longzhi,Dai, Luyuan,Lu, Hongfeng,Li, Jinmei,Zhang, Enlai,Wang, Yanjie,Tang, Cuifeng,Ma, Xiaoding,A, Xinxiang,Cao, Guilan,Tian, Shilin,Cui, Di,Yu, Tengqiong. 2019

[3]Analysis Of Genetic Diversity And P.opulation Structure In Upland C otton (Gossypium Hirsutum L.) Germplasm Using Simple Sequence Repeats. Seyoum, Mulugeta,Du, Xiong Ming,He, Shou Pu,Jia, Yin Hua,Pan, Zhaoe,Sun, Jun Ling,Seyoum, Mulugeta. 2018

[4]Development of 107 SSR markers from whole genome shotgun sequences of Chinese bayberry (Myrica rubra) and their application in seedling identification. Jia, Hui-min,Shen, Yu-tong,Jiao, Yun,Dong, Xiao,Jia, Hui-juan,Du, Fang,Gao, Zhong-shan,Wang, Guo-yun,Liang, Sen-miao,Zhou, Chao-chao,Mao, Wei-hua. 2014

[5]Genetic diversity associated with conservation of endangered Dongxiang wild rice (Oryza rufipogon). Xie, J.,Hu, B.,Xie, J.,Kong, D.,Hu, B.,Wan, Y.,Agrama, H. A.,Hu, B.,Zhuang, J.,Yan, W..

[6]Phylogenetic Analysis of Citrus tristeza virus Isolates of Wild Type Citrus in China. Yi Long,Zhou Chang-yong,Yi Long. 2014

[7]Geographical patterns of Toxoplasma gondii genetic diversity revealed by multilocus PCR-RFLP genotyping. Shwab, E. Keats,Majumdar, Debashree,Su, Chunlei,Zhu, Xing-Quan,Su, Chunlei,Pena, Hilda F. J.,Gennari, Solange M.,Dubey, Jitender P.. 2014

[8]Genetic diversity and differentiation of Acanthoscelides obtectus Say (Coleoptera: Bruchidae) populations in China. Duan, Canxing,Zhu, Zhendong,Wang, Xiaoming,Li, Wanchang,Bao, Shiying.

[9]Analysis of genetic diversity in Arrhenatherum elatius Germplasm using inter-simple sequence repeat (ISSR) markers. Meng, Lin,Yang, Hong Xin,Mao, Pei Chun,Sun, Fu Ding,Gao, Hong Wen. 2011

[10]Assessing genetic diversity of Chinese cultivated barley by STS markers. Chen, Xiwen,Guo, Shaoying,Chen, Defu,Liu, Pin,Jia, Xiangdong,Sun, Lijun. 2006

[11]On the use of SSR markers for the genetic characterization of the Agropyron cristatum (L.) Gaertn. in Northern China. Che, Y. H.,Li, H. J.,Yang, X. M.,Li, X. Q.,Li, L. H.,Che, Y. H.,Yang, Y. P.. 2008

[12]Study on molecular genetic diversity of native duck breeds in China. Li, H.,Yang, N.,Chen, K.,Chen, G.,Tang, Q.,Tu, Y.,Yu, Y.,Ma, Y.. 2006

[13]Development of SSR molecular markers for Allium mongolicum. Hu, Jing,Hu, Xiaoke,Zhang, Jinhu,Fan, Baoli,Yu, Qiushi,Zhang, Qian.

[14]Assessment of genetic diversity among selected groundnut germplasm. I: RAPD analysis. Dwivedi, SL,Gurtu, S,Chandra, S,Yuejin, W,Nigam, SN. 2001

[15]AFLP-Based Genetic Diversity among the Populations of Rosa laxa in Tianshan Mountains of Xinjiang, China. Yang, S. H.,Guo, N.,Ge, W. Y.,Ge, H.. 2013

[16]Cross-species applicability of chicken microsatellite markers for investigation of genetic diversity in Indian duck (Anas platyrhynchos) populations. Mukesh,Sathyakumar, S.,Mukesh,Javed, Ruheena,Javed, Ruheena,Gaur, Uma,Han Jianlin. 2011

[17]Genetic diversity and geographical peculiarity of Tibetan wild soybean (Glycine soja). Wang, Ke-Jing,Li, Xiang-Hua. 2012

[18]Molecular diversity and multilocus organization of the parental lines used in the International Rice Molecular Breeding Program. Yu, SB,Xu, WJ,Vijayakumar, CHM,Ali, J,Fu, BY,Xu, JL,Jiang, YZ,Marghirang, R,Domingo, J,Aquino, C,Virmani, SS,Li, ZK. 2003

[19]Evidence of balancing selection in multiple indigenous chicken populations. Arlud, S.,Zeng, S. C.,Arlud, S.,Arlud, S.,E, G. X.. 2016

[20]Genetic Diversity of Buckwheat Cultivars (Fagopyrum tartaricum Gaertn.) Assessed with SSR Markers Developed from Genome Survey Sequences. Hou, Siyu,Sun, Zhaoxia,Bin Linghu,Xu, Dongmei,Zhang, Bin,Wang, Xingchun,Han, Yuanhuai,Li, HongYing,Han, Yuanhuai,Zhang, Lijun,Qiao, Zhijun,Wu, Bin,Zhang, Lijun,Qiao, Zhijun,Hou, Siyu,Sun, Zhaoxia,Zhang, Bin,Wang, Xingchun,Han, Yuanhuai,Li, HongYing.

作者其他论文 更多>>