数字农科院2.0

Analysis of genetic structure and relationship among nine indigenous Chinese chicken populations by the Structure program

文献类型： 外文期刊

作者： Li, H. F.;Han, W.;Zhu, Y. F.;Shu, J. T.;Zhang, X. Y.;Chen, K. W.

作者机构：

关键词： microsatellite;chicken;population structure;model-based clustering;method

期刊名称： JOURNAL OF GENETICS

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The multi-locus model-based clustering method Structure program was used to infer the genetic structure of nine indigenous Chinese chicken (Gallus gallus) populations based on 16 microsatellite markers. Twenty runs were carried out at each chosen value of predefined cluster numbers (K) under admixture model. The Structure program properly inferred the presence of genetic structure with 0.999 probabilities. The genetic structure not only indicated that the nine kinds of chicken populations were defined actually by their locations, phenotypes or culture, but also reflected the underlying genetic variations. At K = 2, nine chicken populations were divided into two main clusters, one light-body type, including Chahua chicken (CHA), Tibet chicken (TIB), Xianju chicken (XIA), Gushi chicken (GUS) and Baier chicken (BAI); and the other heavy-body type, including Beijing You chicken (YOU), Xiaoshan chicken (XIA), Luyuan chicken (LUY) and Dagu chicken (DAG). GUS and DAG were divided into independent clusters respectively when K equaled 4, 5, or 6. XIA and BIA chicken, XIA and LUY chicken, TIB and CHA chicken still clustered together when K equaled 6, 7, and 8, respectively. These clustering results were consistent with the breeding directions of the nine chicken populations. The Structure program also identified migrants or admixed individuals. The admixed individuals were distributed in all the nine chicken populations, while migrants were only distributed in TIB, XIA and LUY populations. These results indicated that the clustering analysis using the Structure program might provide an accurate representation of the genetic relationship among the breeds.

分类号： Q3

  • 相关文献

[1]Evaluation of genetic diversity and structure of Vietnamese goat populations using multi locus microsatellite markers. Le Thi Thuy,Luu Quang Minh,Tran Thi Thu Thuy,Nguyen Van Ba,Dinh Van Binh,Nguyen Dang Ton,Han, Jian-Lin,Periasamy, Kathiravan.

[2]Genetic diversity and differentiation of Ankole cattle populations in Uganda inferred from microsatellite data. Kugonza, D. R.,Mpairwe, D.,Kiwuwa, G. H.,Kugonza, D. R.,Jianlin, H.,Okeyo, A. M.,Hanotte, O.,Jianlin, H.,Nabasirye, M..

[3]Population structure and conservation genetics of wild rice Oryza rufipogon (Poaceae): a region-wide perspective from microsatellite variation. Gao, LH.

[4]Genetic diversity of pepper (Capsicum spp.) germplasm resources in China reflects selection for cultivar types and spatial distribution. Zhang Xiao-min,Zhang Zheng-hai,Gu Xiao-zhen,Mao Sheng-li,Li Xi-xiang,Wang Li-hao,Zhang Bao-xi,Li Xi-xiang,Chadoeuf, Joel,Palloix, Alain. 2016

[5]Evidence of balancing selection in multiple indigenous chicken populations. Arlud, S.,Zeng, S. C.,Arlud, S.,Arlud, S.,E, G. X.. 2016

[6]Identification and Characterization of a Polymorphic Mono-Nucleotide Microsatellite within 16S rRNA Gene in Chicken Mitochondrial Genome. Zhao, Shengguo,Han, Jianlin,Zhao, Shengguo,Zhao, Shengguo,Hanotte, Olivier,Han, Jianlin,Hanotte, Olivier. 2009

[7]Identification and Microsatellite Markers of a Resistance Gene to Powdery Mildew in Common Wheat Introgressed from Triticum durum. Zhu Zhendong,Kong Xiuying,Zhou Ronghua,Jia Jizeng. 2004

[8]噬菌体展示技术分析鸡贫血病毒VP1蛋白抗原结构特征. 王晓艳,高玉龙,高宏雷,付朝阳,邓小芸,林欢,祁小乐,王笑梅. 2007

[9]GlobalgeneexpressionprofileofchickenspleentissueatalaterstageofIBVinfectionrevealspathogenesisandimmunemechanisms. FengCong,ZongxiHan,FengjieWang,YuhaoShao,XiangangKong,ShengwangLiu. 2014

[10]EIAV基因转移载体启动子的比较. 韩凌霞,李亚明,曲连东,司昌德,姜骞,刘家森. 2006

[11]Estimating wheat grain protein content from ground-based hyperspectral data using an improved detecting method. Lu, YL,Li, SK,Xie, RZ,Gao, SJ,Wang, KR,Wang, G,Xiao, CH. 2005

[12]Visual assessment of soil structure: Evaluation of methodologies on sites in Canada, China and Germany Part I: Comparing visual methods and linking them with soil physical data and grain yield of cereals. Mueller, Lothar,Schindler, Uwe,Kay, Bev D.,Hu, Chunsheng,Li, Yong,Behrendt, Axel,Shepherd, T. Graham,Ball, Bruce C.. 2009

[13]Individual-breed assignment analysis in swine populations by using microsatellite markers. Fan, B,Chen, YZ,Moran, C,Zhao, SH,Liu, B,Yu, M,Zhu, MJ,Xiong, TA,Lil, K. 2005

[14]Genetic and morphological characterisation of the Ankole Longhorn cattle in the African Great Lakes region. Ndumu, Deo B.,Baumung, Roswitha,Wurzinger, Maria,Soelkner, Johann,Ndumu, Deo B.,Ndumu, Deo B.,Hanotte, Olivier,Okeyo, Mwai A.,Jianlin, Han,Kibogo, Harrison,Jianlin, Han. 2008

[15]Genomic characterization of emergent pseudorabies virus in China reveals marked sequence divergence: Evidence for the existence of two major genotypes. Ye, Chao,Tian, Zhi-Jun,Zhao, Kuan,Guo, Jin-Chao,Jiang, Cheng-Gang,Wang, Shu-Jie,Chang, Xiao-Bo,Peng, Jin-Mei,Tang, Yan-Dong,Sun, Ming-Xia,Cai, Xue-Hui,An, Tong-Qing,Zhang, Qing-Zhan,Zheng, Hao,Liu, Fei,Tong, Wu,Jiang, Yi-Feng,Zhou, Yan-Jun,Tong, Guang-Zhi,Shi, Mang,Shi, Mang.

[16]Study on molecular genetic diversity of native duck breeds in China. Li, H.,Yang, N.,Chen, K.,Chen, G.,Tang, Q.,Tu, Y.,Yu, Y.,Ma, Y.. 2006

[17]Genetic variability and individual assignment of Chinese indigenous sheep populations (Ovis aries) using microsatellites. Niu, L. L.,Li, H. B.,Du, L. X.,Li, H. B.,Ma, Y. H.. 2012

[18]Mapping molecular diversity of indigenous goat genetic resources of Asia. Periasamy, Kathiravan,Pichler, Rudolf,Diallo, Adama,Podesta, Mario Garcia,Shamsuddin, Mohammed,Viljoen, Gerrit J.,Vahidi, S. M. F.,Silva, Pradeepa,Faruque, M. O.,Naqvi, A. N.,Basar, Muladno,Cao, JianHua,Zhao, ShuHong,Le Thi Thuy,Boettcher, Paul,Garcia, Jose Fernando,Han, Jian-Lin,Marsan, Paolo Ajmone.

[19]Analysis of SSRs Information in Capsicum spp. from EST Database. Huang Huan-huan,Zhang Zhong-hua,Zhang Zheng-hai,Mao Sheng-li,Wang Li-hao,Zhang Bao-xi. 2011

[20]Large-scale microsatellite development in grasspea (Lathyrus sativus L.), an orphan legume of the arid areas. Yang, Tao,Jiang, Junye,Sun, Xuelian,Wang, Fang,Guan, Jianping,Zong, Xuxiao,Burlyaeva, Marina,Hu, Jinguo,Coyne, Clarice J.,Kumar, Shiv,Redden, Robert,Chang, Jianwu,Hao, Xiaopeng. 2014

作者其他论文 更多>>