数字农科院2.0

Viral metagenomics reveals the RNA viral composition of herbivorous wildlife on the Qinghai-Tibet Plateau

文献类型： 外文期刊

作者： Yue Chen;Shiyin Huang;Shuang Zhang;Haixuan Wang;Xiaofei Song;Likai Ji;Quan Shen;Shixing Yang;Yuwei Liu;Xiaochun Wang;Ping Wu;Hongfeng Yang;Tongling Shan;Xiaolong Wang;Wen Zhang

作者机构：

关键词： Diversity;Herbivorous wildlife;Metagenomic;RNA virome

期刊名称： Virology

ISSN： 0042-6822

年卷期： 2026 年 617 卷

页码：

收录情况： SCIE（2025版）

摘要： RNA viruses, a widely distributed group of pathogens in nature, possess exceptionally high genetic diversity and rapid evolutionary potential. High-altitude ecosystems, represented by the Qinghai-Tibet Plateau, with their unique environmental conditions, may harbor distinct viral communities. However, there remains a lack of systematic understanding regarding the composition and distribution of RNA viruses in wildlife under such extreme environments. In this study, a total of 741 fecal samples were collected from three regions on the Qinghai-Tibet Plateau, and viral metagenomics technology was used to reveal the composition and diversity of RNA viruses in the fecal samples of six species of herbivorous wild animals on the plateau. We identified a substantial abundance of RNA viruses, classified into 18 distinct viral families. Furthermore, the structure of the viral communities varied among different host species. Through assembly, 28 viral sequences belonging to the families Astroviridae, Picornaviridae, Picobirnaviridae, Tobaniviridae, and Caliciviridae were identified. Phylogenetic analysis revealed that the newly identified viral strains share close relationships with viruses found in humans, marmots, and other mammals. The results indicate that wildlife in this region are reservoirs of unidentified RNA viruses, some of which may pose potential threats to public health and the animal husbandry. These findings provide crucial scientific evidence and data support for future virus surveillance, ecological risk assessment, and the prevention and control of emerging infectious diseases at their source.

分类号：

  • 相关文献

[1]Viral metagenomics reveals parvovirus dark matter of herbivorous wildlife from the Qinghai-Tibet Plateau. Yue Chen,Shiyin Huang,Xiang Lu,Likai Ji,Quan Shen,Shixing Yang,Yuwei Liu,Xiaochun Wang,Ping Wu,Hongfeng Yang,Tongling Shan,Wen Zhang. 2025

[2]Highly diverse RNA viruses and phage sequences concealed within birds. Lu, Xiang,Ji, Likai,Wang, Haoning,Zhang, Qing,Wang, Xiaochun,Liu, Yuwei,Shen, Quan,Yang, Shixing,Ma, Xiao,Zhang, Wen,Shan, Tongling. 2024

[3]First Discovery of Phenuiviruses within Diverse RNA Viromes of Asiatic Toad (Bufo gargarizans) by Metagenomics Sequencing. Zhangfu Chen,Haiyu Zhao,Zhongkuan Li,Mengkun Huang,Nan Si,Hui Zhao,Xiaolu Wei,Bo Sun,George F. Gao,Ziqian Xu,William J. Liu. 2023

[4]Isolation, characterization and phylogenetic analysis of the resistance gene analogues (RGAs) in banana (Musa spp.). Pei, Xinwu,Li, Shengjun,Jiang, Ying,Zhang, Yongqiang,Wang, Zhixing,Jia, Shirong.

[5]Seasonal variation of microbial community and methane metabolism in coalbed water in the Erlian Basin, China. Li Fu,Shouchao Lai,Zhuo Zhou,Zhenhong Chen,Lei Cheng. 2023

[6]Metagenomic and proteomic analysis of bacterial retting community and proteome profile in the degumming process of kenaf bast. Xu H.,Zhang L.,Feng X.,Yang Q.,Zheng K.,Duan S.,Cheng L.. 2022

[7]Parvovirus dark matter in the cloaca of wild birds. Dai Z.,Wang H.,Wu H.,Zhang Q.,Ji L.,Wang X.,Shen Q.,Yang S.,Ma X.,Shan T.,Zhang W.. 2022

[8]Diversity In Metagenomic Sequences Reveals New Pathogenic Fungus Associated With Smut In Job'S Tears. Li, XD, Shi, M, Pan, H, Lu, XJ, Wei, XY, Lu, P, Lian, QX, Fu, YH. 2020

[9]Micropathogen community identification in ticks (Acari: Ixodidae) using third-generation sequencing. Jin Luo,Qiaoyun Ren,Wenge Liu,Xiangrui Li,Hong Yin,Mingxin Song,Bo Zhao,Guiquan Guan,Jianxun Luo,Guangyuan Liu. 2021

[10]Analysis of Microorganism Diversity in Haemaphysalis longicornis From Shaanxi, China, Based on Metagenomic Sequencing. Runlai Cao,Qiaoyun Ren,Jin Luo,Zhancheng Tian,Wenge Liu,Bo Zhao,Jing Li,Peiwen Diao,Yangchun Tan,Xiaofei Qiu,Gaofeng Zhang,Qilin Wang,Guiquan Guan,Jianxun Luo,Hong Yin,Guangyuan Liu. 2021

[11]Metagenomic survey of viral diversity obtained from feces of piglets with diarrhea. Lingling Qian,Zi Zhuang,Juan Lu,Huiying Wang,Xiaochun Wang,Shixing Yang,Likai Ji,Quan Shen,Wen Zhang,Tongling Shan. 2024

[12]Revealing the Viable Microbial Community of Biofilm in a Sewage Treatment System Using Propidium Monoazide Combined with Real-Time PCR and Metagenomics. Jiayin Liang,Xiangqun Zheng,Tianyang Ning,Jiarui Wang,Xiaocheng Wei,Lu Tan,Feng Shen. 2024

[13]Anaerobic hydrocarbon biodegradation by alkylotrophic methanogens in deep oil reservoirs. Zhang, Cui-Jing,Zhou, Zhuo,Cha, Guihong,Li, Ling,Fu, Lin,Liu, Lai-Yan,Yang, Lu,Wegener, Gunter,Cheng, Lei,Li, Meng. 2024

[14]Unveiling the Virome of Wild Birds: Exploring CRESS-DNA Viral Dark Matter. Ziyuan Dai,Haoning Wang,Juan Xu,Xiang Lu,Ping Ni,Shixing Yang,Quan Shen,Xiaochun Wang,Wang Li,Xiaolong Wang,Chenglin Zhou,Wen Zhang,Tongling Shan. 2024

[15]Biodegradation of azo dyes by a newly enriched extreme-thermophilic bacterial consortium. Fang Tian,Guang Guo,Chong Liu,Jiuxiao Hao,Keqiang Ding,Feng Yang,Tingfeng Liu,Jin Xu,Zhengbing Guan,Soroush Abolfathi. 2025

[16]Bacterial community structure in the Cerasus sachalinensis Kom. rhizosphere based on the polymerase chain reaction - denaturing gradient gel electrophoresis (PCR-DGGE) method. Li, Zhixia,Lu, Deguo,Qin, Sijun,Ma, Huaiyu,Liu, Guocheng. 2011

[17]Genetic diversity of Malus cultivars and wild relatives in the Chinese National Repository of Apple Germplasm Resources. Gao, Yuan,Liu, Fengzhi,Wang, Kun,Wang, Dajiang,Gong, Xin,Liu, Lijun,Richards, Christopher M.,Henk, Adam D.,Volk, Gayle M.. 2015

[18]Desmoglein 4 diversity and correlation analysis with coat color in goat. E, G. X.,Zhao, Y. J.,Na, R. S.,Zhao, Z. Q.,Jiang, C. D.,Zhang, J. H.,Chen, L. P.,Qiu, X. Y.,Hu, W.,Huang, Y. F.,Ma, Y. H.,Cao, G. L.,He, J. N.,Arlvd, S.. 2016

[19]Nematode communities in continuous tomato-cropping field soil infested by root-knot nematodes. Shi, L. B.,Wu, H. Y.,Zheng, G. D.,Peng, D. L.. 2012

[20]High-throughput sequencing reveals bacterial community composition in the rhizosphere of the invasive plant Flaveria bidentis. Song, Z.,Zhang, R. H.,Fu, W. D.,Zhang, T.,Yan, J.,Zhang, G. L..

作者其他论文 更多>>