数字农科院2.0

Genomic Regions Associated with Growth and Reproduction Traits in Pink-Eyed White Mink

文献类型： 外文期刊

作者： Hongyu Shi;Linling Liu;Peter Foged Larsen;Yu Ding;Tietao Zhang;Haihua Zhang;Zongyue Liu

作者机构：

关键词： body weight;genome-wide association study;mink;number born alive;single-nucleotide polymorphism;total number born

期刊名称： Genes

ISSN： 2073-4425

年卷期： 2024 年 15 卷 9 期

页码：

收录情况： SCIE（2024版）

摘要： In mink breeding, balanced selection for growth and reproductive features is essential because these traits are contradictory. The variables of total number born (TNB), number born alive (NBA), and body weight (BW) are highly valuable in terms of their importance in mink production. A comprehensive understanding of the molecular mechanisms that drive these features could offer vital insights into their genetic compositions. In the present study, the single-nucleotide polymorphism (SNP) genotypes of 219 minks were obtained via double digest restriction-site associated DNA sequencing (ddRAD-seq). Following several rounds of screening, about 2,415,121 high-quality SNPs were selected for a genome-wide association study (GWAS). The GWAS was used to determine BW and reproductive traits in pink-eyed white mink. It was suggested that SLC26A36, STXBP5L, and RPS 29 serve as potential genes for the total number of kits born (TNB), while FSCB, PDPN, NKX 2-1, NFKB 1, NFKBIA, and GABBR1 are key genes for the number born alive (NBA). Moreover, RTTN, PRPF31, MACROD1, and KYAT1 are possible BW genes based on association results and available functional data from gene and mammalian phenotype databases. These results offer essential information about the variety of mink and theoretical principles for applying mink breeds.

分类号：

  • 相关文献

[1]Genome-wide association study of three litter traits in Yorkshire pigs. Shi, Lijun,Li, Huihui,Gao, Xuefeng,Wang, Lixian. 2022

[2]Genome-wide association study for boll weight in Gossypium hirsutum races. Yuanyuan Wang,Xinlei Guo,Yanchao Xu,Runrun Sun,Xiaoyan Cai,Zhongli Zhou,Tengfei Qin,Ye Tao,Baihui Li,Yuqing Hou,Qinglian Wang,Fang Liu. 2023

[3]A Genome-Wide Association Study Reveals the Genetic Mechanisms of Nutrient Accumulation in Spinach. Ji, Ni,Liu, Zhiyuan,She, Hongbing,Xu, Zhaosheng,Zhang, Helong,Fang, Zhengwu,Qian, Wei. 2024

[4]Whole-genome resequencing revealed the genetic diversity and body weight-related genes of Gannan yak. Zhang, Minghao,Huang, Chun,Bao, Qi,Wang, Tong,Ma, Xiaoming,Meng, Guangyao,Zhou, Xuelan,Zheng, Qingbo,Chu, Min,Liang, Chunnian,Guo, Xian,Bao, Pengjia,Yan, Ping. 2025

[5]cis-Regulatory variation affecting gene expression contributes to the improvement of maize kernel size. Li Y.-X., Lu J., He C., Wu X., Cui Y., Chen L., Zhang J., Xie Y., An Y., Liu X., Zhen S., Liu Y., Li C., Zhang D., Shi Y.-S., Song Y., Wang J., Li Y., Wang G., Fu J., Wang T.. 2022

[6]GWAS of Reproductive Traits in Large White Pigs on Chip and Imputed Whole-Genome Sequencing Data. Wang X.,Wang L.,Shi L.,Zhang P.,Li Y.,Li M.,Tian J.,Wang L.,Zhao F.. 2022

[7]Recombination frequency variation in maize as revealed by genomewide single-nucleotide polymorphisms. Farkhari, Mohammad,Lu, Yanli,Xu, Yunbi,Farkhari, Mohammad,Naghavi, Mohammad R.,Lu, Yanli,Rong, Tingzhao,Shah, Trushar,Zhang, Shihuang,Xu, Yunbi.

[8]Porcine skeletal muscle differentially expressed gene CMYA1: isolation, characterization, mapping, expression and association analysis with carcass traits. Xu, X. L.,Xu, X. W.,Pan, P. W.,Yu, M.,Liu, B.,Xu, X. L.,Xu, X. W.,Pan, P. W.,Yu, M.,Liu, B.,Li, K.,Jiang, Z. H.,Rothschild, M. F.,Rothschild, M. F..

[9]Association mapping of caffeine content with TCS1 in tea plant and its related species. Jin, Ji-Qiang,Yao, Ming-Zhe,Ma, Chun-Lei,Ma, Jian-Qiang,Chen, Liang.

[10]Association between single-nucleotide polymorphism in PIK3CD gene and litter size in Small Tail Han sheep. He, Xiaoyun,Wang, Wei,Du, Xiaolong,Chu, Mingxing. 2022

[11]Genetic diversity and population structure of modern wheat (Triticum aestivum L.) cultivars in Henan Province of China based on SNP markers. Wenjing Tang,Zhongdong Dong,Lifeng Gao,Xicheng Wang,Tianbao Li,Congwei Sun,Zongli Chu,Dangqun Cui. 2023

[12]An Integrated Strategy for Analyzing the Complete Complex Integrated Structure of Maize MON810 and Identification of an SNP in External Insertion Sequences. Chunmeng Huang,Yongjun Zhang,Huilin Yu,Xiuping Chen,Jiajian Xie. 2024

[13]Polymorphisms of ITGA9 Gene and Their Correlation with Milk Quality Traits in Yak (Bos grunniens). Mengfan Zhang,Xita Zha,Xiaoming Ma,Yongfu La,Xian Guo,Min Chu,Pengjia Bao,Ping Yan,Xiaoyun Wu,Chunnian Liang. 2024

[14]Exposure to mild temperatures decreases overwintering larval survival and post-diapause reproductive potential in the rice stem borer Chilo suppressalis. Chen, Junhui,Chen, Liyuan,Chen, Chao,Xiao, Haijun,Wu, Shaohui.

[15]Effects of high temperature on body size and weight of Ophraella communa. Zheng, Xing-Wen,Luo, Min,Guo, Jian-Ying,Zhou, Zhong-Shi,Wan, Fang-Hao,Chen, Hong-Song,Luo, Yuan-Hua. 2014

[16]Influence of Lighting Schedule and Nutrient Density in Broiler Chickens: Effect on Growth Performance, Carcass Traits and Meat Quality. Li, Wen-bin,Guo, Yan-ti,Wang, Rong,He, Yao,Su, Dong-ge,Chen, Ji-lan.

[17]Correlation between polymorphisms in ADSL and GARS-AIRS-GART genes with inosine 5'-monophosphate (IMP) contents in Beijing-you chickens. Chen, J. L.,Zhao, G. P.,Zheng, M. Q.,Wen, J.,Chen, J. L.,Zhao, G. P.,Zheng, M. Q.,Wen, J.,Ye, M. H..

[18]Effect of polymorphisms in the CAMKMT gene on growth traits in Ujumqin sheep. Ma, Xiaomeng,Guan, Long,Xuan, Junli,Wang, Huihua,Yuan, Zehu,Wu, Mingming,Liu, Ruizao,Zhu, Caiye,Wei, Caihong,Zhao, Fuping,Du, Lixin,Zhang, Li.

[19]Alfalfa polysaccharides improve the growth performance and antioxidant status of heat-stressed rabbits. Liu, Hua Wei,Dong, Xiao Fang,Tong, Jian Ming,Zhang, Qi.

[20]Estimation of genetic parameters for body weight in Chinese Simmental cattle using random regression model. Yang, RQ,Ren, HY,Xu, SZ,Pan, YC. 2004

作者其他论文 更多>>