数字农科院2.0

Genome-wide association studies of plant architecture-related traits and 100-seed weight in soybean landraces

文献类型： 外文期刊

作者： Xiaoli Zhang;Wentao Ding;Dong Xue;Xiangnan Li;Yang Zhou;Jiacheng Shen;Jianying Feng;Na Guo;Lijuan Qiu;Han Xing;Jinming Zhao

作者机构：

关键词： 100-seed weight; Candidate genes; GWAS; Plant architecture-related traits; Soybean (Glycine max (L.) Merr.)

期刊名称： BMC Genomic Data

ISSN： 2730-6844

年卷期： 2021 年 22 卷 1 期

页码：

收录情况： 不在遴选数据库范围

摘要： Background: Plant architecture-related traits (e.g., plant height (PH), number of nodes on main stem (NN), branch number (BN) and stem diameter (DI)) and 100-seed weight (100-SW) are important agronomic traits and are closely related to soybean yield. However, the genetic basis and breeding potential of these important agronomic traits remain largely ambiguous in soybean (Glycine max (L.) Merr.). Results: In this study, we collected 133 soybean landraces from China, phenotyped them in two years at two locations for the above five traits and conducted a genome-wide association study (GWAS) using 82,187 single nucleotide polymorphisms (SNPs). As a result, we found that a total of 59 SNPs were repeatedly detected in at least two environments. There were 12, 12, 4, 4 and 27 SNPs associated with PH, NN, BN, DI and 100-SW, respectively. Among these markers, seven SNPs (AX-90380587, AX-90406013, AX-90387160, AX-90317160, AX-90449770, AX-90460927 and AX-90520043) were large-effect markers for PH, NN, BN, DI and 100-SW, and 15 potential candidate genes were predicted to be in linkage disequilibrium (LD) decay distance or LD block. In addition, real-time quantitative PCR (qRT-PCR) analysis was performed on four 100-SW potential candidate genes, three of them showed significantly different expression levels between the extreme materials at the seed development stage. Therefore, Glyma.05 g127900, Glyma.05 g128000 and Glyma.05 g129000 were considered as candidate genes with 100-SW in soybean. Conclusions: These findings shed light on the genetic basis of plant architecture-related traits and 100-SW in soybean, and candidate genes could be used for further positional cloning. © 2021, The Author(s).

分类号：

  • 相关文献

[1]Association Mapping Analysis Of Fatty A.cid Content In Different E cotypic Rapeseed Using Mrmlm. Xu, Xinfu,Qiao, Cailin,Qiao, Cailin,Xiao, Zhongchun,Wang, Shuxian,Xu, Xinfu,Zhu, Meichen,Qu, Cunmin,Qu, Cunmin,Wei, Lijuan,Wang, Rui,Lu, Kun,Lu, Kun,Wang, Rui,Zhu, Meichen,Guan, Mingwei,Guan, Mingwei,Liang, Ying,Li, Jiana,Jia, Ledong,Li, Jiana,Wei, Lijuan,Xiao, Zhongchun,Wang, Shuxian,Liang, Ying,Huang, Xiaohu,Jia, Ledong,Huang, Xiaohu. 2019

[2]Identification Of Candidate Genes Controlling O.il Content By Combination O f Genome-Wide Association And Transcriptome Analysis In The Oilseed Crop Brassica Napus. Liu, Jingsen,Du, Hai,Lu, Kun,Zhang, Chao,Wei, Lijuan,Huo, Qiang,Yang, Bo,Li, Jiana,Tang, Fang,Zhang, Liyuan,Zhang, Chao,Lu, Kun,Wei, Lijuan,Du, Hai,Qu, Cunmin,Li, Jiana,Li, Nannan,Li, Nannan,Li, Shengting,Xiao, Zhongchun,Qu, Cunmin,Wang, Shufeng,Zhang, Liyuan,Xiao, Zhongchun,Huo, Qiang,Liu, Jingsen,Yang, Bo,Tang, Fang. 2019

[3]Gwas Uncovers Differential Genetic Bases F.or Drought And Salt T olerances In Sesame At The Germination Stage. Li, DH, Dossa, K, Zhang, YX, Wei, X, Wang, LH, Zhang, YJ, Liu, AL, Zhou, R, Zhang, XR. 2018

[4]Genetic Dissection of Mature Root Characteristics by Genome-Wide Association Studies in Rapeseed (Brassica napus L.). Sani Ibrahima,Keqi Lia,Nazir Ahamda,Lieqiong Kuanga,Salisu Bello Sadaub,Ze Tiana,Lintao Huanga,Xinfa Wanga,Xiaoling Duna,Hanzhong Wang. 2021

[5]Genetic dissection of mature root characteristics by genome-wide association studies in rapeseed (Brassica napus l.). Ibrahim S.,Li K.,Ahmad N.,Kuang L.,Sadau S.B.,Tian Z.,Huang L.,Wang X.,Dun X.,Wang H.. 2021

[6]Genome-Wide Association Study Identifying Candidate G.enes Influencing Important Agronomic T raits Of Flax (Linum Usitatissimum L.)Using Slaf-Seq. Xie, DW, Dai, ZG, Yang, ZM, Sun, J, Zhao, DB, Yang, X, Zhang, LG, Tang, Q, Su, JG. 2018

[7]Identification of UDP-glucosyltransferase involved in the biosynthesis of phloridzin in Gossypium hirsutum. . 2025

[8]A natural allelic variant of GmSW17.1 confers high 100-seed weight in soybean. Zhang, Hao,Yang, Lei,Guo, Shiyu,Tian, Yu,Yang, Chunyan,Zhao, Chaosen,Shan, Zhihui,Wang, Qi,Zheng, Zihao,Li, Ying-hui,Qiu, Li-juan. 2024

[9]Discovery Of Genomic Regions And C.andidate Genes Controlling Shelling P ercentage Using Qtl-Seq Approach In Cultivated Peanut (Arachis Hypogaea L.). Pandey, Manish K.,Varshney, Rajeev K.,Cai, Yan,Luo, Huaiyong,Chen, Yuning,Chen, Weigang,Wu, Bei,Zhou, Xiaojing,Liu, Nian,Guo, Jianbin,Huang, Li,Jiang, Huifang,Khan, Aamir W.,Liao, Boshou,Lei, Yong. 2019

[10]Next-Generation Sequencing Identified Genomic Region A.nd Diagnostic Markers For R esistance To Bacterial Wilt On Chromosome B02 In Peanut (Arachis Hypogaea L.). Huang, Li,Chen, Weigang,Zhou, Xiaojing,Chen, Yuning,Varshney, Rajeev K.,Khan, Aamir W.,Pandey, Manish K.,Guo, Jianbin,Liao, Boshou,Liu, Nian,Lei, Yong,Luo, Huaiyong,Ren, Xiaoping,Wu, Bei,Jiang, Huifang. 2019

[11]Multi-Locus Genome-Wide Association Studies Of F.iber-Quality Related Traits In C hinese Early-Maturity Upland Cotton. Su, Junji,Su, Junji,Su, Junji,Ma, Qi,Wang, Caixiang,Su, Junji,Hao, Fushun,Li, Mei. 2018

[12]Identifying Functional Genes Influencing Gossypium H.irsutum Fiber Quality. Chen, Hong,Dong, Chengguang,Han, Zegang,Ju, Longzhen,Li, Baocheng,Ma, Xiaomei,Mei, Gaofu,Si, Zhanfeng,Wang, Juan,Yu, Yu,Zhang, Tianzhen,Zhou, Xiaofeng. 2019

[13]Genetic Detection Of Lint Percentage A.pplying Single-Locus And Multi-Locus G enome-Wide Association Studies In Chinese Early-Maturity Upland Cotton. Wang, Caixiang,Su, Junji,Wang, Ji,Hao, Fushun,Wang, Caixiang,Ma, Qi,Su, Junji,Ning, Xinzhu,Li, Jilian. 2019

[14]Combined Genome-Wide Association Analysis And T.ranscriptome Sequencing To Identify C andidate Genes For Flax Seed Fatty Acid Metabolism. Wang, Jing,Dai, Zhigang,Zhang, Shuquan,Xu, Ying,Zhang, Shuli,Chen, Jing,Zhao, Debao,Deng, Canhui,Xie, Dongwei,Yang, Zemao,Xie, Dongwei,Su, Jianguang,Tang, Qing. 2019

[15]A Combined Linkage And Gwas Analysis Identifies Qtls Linked To Soybean Seed Protein And Oil Content. Sun, Shi,Yuan, Shan,Hou, Wensheng,Wu, Cunxiang,Han, Tianfu,Wang, Liwei,Wu, Tingting,Zhang, Tengfei,Jiang, Bingjun,Zhen, Caixin,Hou, Wensheng. 2019

[16]Genome-Wide Association Study Identifies Loci A.nd Candidate Genes For I nternal Organ Weights In Simmental Beef Cattle. An, BX, Xia, JW, Chang, TP, Wang, XQ, Miao, J, Xu, LY, Zhang, LP, Gao, X, Chen, Y, Li, JY, Gao, HJ. 2018

[17]Identification Of Key Genes Involved In Embryo Development And Differential Oil Accumulation In Two Contrasting Maize Genotypes. Zhang, XX, Hong, MY, Wan, HP, Luo, LX, Yu, Z, Guo, RX. 2019

[18]Transcriptome and QTL analyses reveal candidate genes for fiber quality in Upland cotton. Zhu, De,Wang, Hantao,Li, Ximei,Shen, Chao,Zhang, Ruiting,Wang, Hantao,Lin, Zhongxu. 2020

[19]Loci And Candidate Genes Conferring R.esistance To Soybean Cyst N ematode Hg Type 2.5.7. Zhao, X, Teng, WL, Li, YH, Liu, DY, Cao, GL, Li, DM, Qiu, LJ, Zheng, HK, Han, YP, Li, WB. 2017

[20]Genome-Wide Scan For Runs Of H.omozygosity Identifies Candidate Genes I n Three Pig Breeds. Xie, R, Shi, LY, Liu, JX, Deng, TY, Wang, LX, Liu, Y, Zhao, FP. 2019

作者其他论文 更多>>