数字农科院2.0

Genome-wide computational analysis of the dirigent gene family in Solanum lycopersicum

文献类型： 外文期刊

作者： Saddique, Muhammad Abu Bakar;Guan, Ge;Hu, Beibei;Khan, Mudassir;Amjad, Muhammad Dawood;Abbas, Sana;Hussain, Zahid;Maqsood, Muhammad Faizan Khurram;Luo, Xiumei;Ren, Maozhi

作者机构：

关键词： Dirigent (DIR);Solanum lycopersicum;Genome-wide analysis;Bioinformatics

期刊名称： PROTEOME SCIENCE

ISSN：

年卷期： 2024 年 22 卷 1 期

页码：

收录情况： SCIE（2024版）

摘要： BackgroundDirigent (DIR) genes play a key role in the development of organic products in plants. They confer conformational influence on processes that lack stereoselectivity and regioselectivity through processes that are mostly understood. They are required to produce lignans, which are a unique and widely distributed family of plant secondary metabolites with intriguing pharmacological characteristics and potential role in plant development. DIR genes are implicated in the process of lignification and protect plants from environmental stresses, including biotic and abiotic stresses. Nevertheless, no research has been performed on the DIR gene family in Solanum lycopersicum. This study provides detailed information on the DIR gene family in S. lycopersicum.Methods and resultsThe conserved domain analysis, phylogenetic analysis, evolutionary adaptation, cis-acting elements, proteomic analysis, signal peptide detection, transmembrane potential analysis, sequence identity and similarity analysis, gene assembly, genomic localization, duplication of gene analysis, and evolutionary linkage of 31 potential DIR genes were studied. All these analyses provide a deep understanding of DIR genes in the S. lycopersicum genome that will provide a useful reference for further functional analysis of the DIR genes in S. lycopersicum.ConclusionThis research provides an in-depth and comprehensive explanation of the detailed process and structural characterization of DIR genes in the genome of S. lycopersicum, laying the groundwork for future plant genetic engineering and crop development exploration. This work will provide valuable information for identifying DIR genes in higher plants and support future research on the DIR gene family.

分类号：

  • 相关文献

[1]ComparativecharacterizationofmicroRNAprofilesofdifferentgenotypesofToxoplasmagondii. 周东辉,MinjunXu,SiyangHuang,FurongZhao,AlasdairJ.Nisbet,HuiqunSong,XingquanZhu. 2013

[2]“大通”牦牛Lfcin基因克隆及生物信息学分析(英文). 裴杰,阎萍,姬国红,冯瑞林,梁春年,郭宪,曾玉峰,包鹏甲,褚敏. 2009

[3]Genome-Wide Analysis Of Lim Family G.enes In Foxtail Millet ( Setaria Italica L.) And Characterization Of The Role Of Siwlim2B In Drought Tolerance. Zhang, Xiao-Hong,Yu, Yue,Zhou, Yong-Bin,Yang, Rui,Yang, Rui,Xu, Zhao-Shi,Sun, Jian-Chang,Min, Dong-Hong,Ma, You-Zhi,Yu, Yue,Chen, Ming,Chen, Jun. 2019

[4]A Comparative Genome-Wide Analysis Of T.he R2R3-Myb Gene Family A mong Four Gossypium Species And Their Sequence Variation And Association With Fiber Quality Traits In An Interspecific G. Hirsutum X. Ma, Jianjiang,Ma, Qiang,Wang, Nuohan,Pei, Wenfeng,Liu, Guoyuan,Wu, Man,Yu, Shuxun,Yu, Jiwen,Wang, Nuohan,Ma, Jianjiang,Cui, Yupeng,Yu, Shuxun,Zhang, Jinfa,Ma, Lingjian,Zang, Xinshan. 2019

[5]Haploid Induction via In vitro Gynogenesis in Tomato (Solanum lycopersicum L.). Zhao He,Wang Xiao-xuan,Du Yong-chen,Zhu De-wei,Guo Yan-mei,Gao Jian-chang,Li Fei,Snyder, John C.. 2014

[6]A novel strategy to enhance resistance to Cucumber mosaic virus in tomato by grafting to transgenic rootstocks. Bai Miao,Chen Wen-ting,Yang Gun-shun,Xie Bing-yan. 2016

[7]Identification of microRNAs in two species of tomato, Solanum lycopersicum and Solanum habrochaites, by deep sequencing. Li Qian-nan,Guo Guang-jun,Gao Jian-chang,Wang Xiao-xuan,Guo Yon-mei,Du Yong-chen,Li Qian-nan,Li Qian-nan,Snyder, John C.. 2015

[8]Tomato defense to the powdery mildew fungus: differences in expression of genes in susceptible, monogenic- and polygenic resistance responses are mainly in timing. Li, Chengwei,Bai, Yuling,Jacobsen, Evert,Visser, Richard,Lindhout, Pim,Bonnema, Guusje. 2006

[9]Genome-wide analysis reveals population structure and selection in Chinese indigenous sheep breeds. Wei, Caihong,Wang, Huihua,Wu, Mingming,Cao, Jiaxve,Liu, Zhen,Liu, Ruizao,Zhao, Fuping,Zhang, Li,Du, Lixin,Liu, Gang,Lu, Jian,Liu, Chousheng. 2015

[10]Manipulation of Host Quality and Defense by a Plant Virus Improves Performance of Whitefly Vectors. Su, Qi,Zhou, Xiao Mao,Su, Qi,Xie, Wen,Liu, Bai Ming,Wang, Shao Li,Wu, Qing Jun,Zhang, You Jun,Preisser, Evan L..

[11]Genome-Wide Identification Of C2H2 Zinc-Finger Genes And Their Expression Patterns Under Heat Stress In Tomato (Solanum Lycopersicum L.). Pan, Yu. 2019

[12]Genome-Wide Analysis Of The Nf-Yb G.ene Family In Gossypium H irsutum L. And Characterization Of The Role Of Ghdnf-Yb22 In Embryogenesis. Ge, Xiaoyang,Yang, Zhaoen,Li, Fuguang,Yang, Zhaoen,Chen, Yanli,Xiao, Yanqing,Chen, Yanli,Zhang, Chaojun,Zhang, Xianlong,Wang, Ye,Wang, Peng. 2018

[13]Quantifying the source-sink balance and carbohydrate content in three tomato cultivars. Li, Tao,Heuvelink, Ep,Marcelis, Leo F. M.,Li, Tao. 2015

[14]Tomato-Pseudomonas syringae interactions under elevated CO2 concentration: the role of stomata. Li, Xin,Sun, Zenghui,Shao, Shujun,Zhang, Shuai,Ahammed, Golam Jalal,Zhang, Guanqun,Jiang, Yuping,Zhou, Jie,Xia, Xiaojian,Zhou, Yanhong,Yu, Jingquan,Shi, Kai,Li, Xin,Jiang, Yuping,Yu, Jingquan,Shi, Kai.

[15]The soybean GmDi19-5 interacts with GmLEA3.1 and increases sensitivity of transgenic plants to abiotic stresses. Feng, Zhi-Juan,Cui, Xiao-Yu,Cui, Xi-Yan,Chen, Ming,Yang, Guang-Xiao,Ma, You-Zhi,He, Guang-Yuan,Xu, Zhao-Shi. 2015

[16]Genome-wide analysis of regulatory proteases sequences identified through bioinformatics data mining in Taenia solium. Yan, Hong-Bin,Lou, Zhong-Zi,Li, Li,Zheng, Yadong,Luo, Xuenong,Hou, Junling,Guo, Aijiang,Jia, Wan-Zhong,Cai, Xuepeng,Yan, Hong-Bin,Brindley, Paul J.,Yan, Hong-Bin,Brindley, Paul J.. 2014

[17]Promotive effects of 5-aminolevulinic acid on photosynthesis and chlorophyll fluorescence of tomato seedlings under suboptimal low temperature and suboptimal photon flux density stress - Short communication. Guo, Xiaoqing,Li, Yansu,Yu, Xianchang. 2012

[18]Establishment of an in vitro method for evaluating whitefly resistance in tomato. Guo, Guangjun,Gao, Jianchang,Wang, Xiaoxuan,Guo, Yanmei,Du, Yongchen,Snyder, J. C..

[19]Exogenous Application of Abscisic Acid, Putrescine, or 2,4-Epibrassinolide at Appropriate Concentrations Effectively Alleviate Damage to Tomato Seedlings from Suboptimal Temperature Stress. Jiang, Weijie,Bai, Jie,Yang, Xueyong,Yu, Hongjun,Liu, Yanpeng.

[20]Selection signature analysis reveals genes associated with tail type in Chinese indigenous sheep. Yuan, Z.,Liu, Z.,Zhu, C.,Hu, S.,Ma, X.,Zhang, L.,Du, L.,Wang, H.,Wei, C.,Liu, E.,Kijas, J. W.,Zhu, C.,Wang, H..

作者其他论文 更多>>