数字农科院2.0

An Integrated Peach Genome Structural Variation Map Uncovers Genes Associated With Fruit Traits

文献类型： 外文期刊

作者： Guo, J; Cao, K; Deng, CCL; Li, Y; Zhu, GR; Fang, WC; Chen, CW; Wang, XW; Wu, JL; Guan, LP; Wu, S; Guo, WW; Yao, JL; Fei, ZJ; Wang, LR

作者机构：

关键词： Svs; Gwas; Peach; Fruit; Fruit Shape

期刊名称： GENOME BIOLOGY

ISSN： 1474-760X

年卷期： 2020 年 21 卷 1 期

页码：

收录情况： SCI

摘要： BackgroundGenome structural variations (SVs) have been associated with key traits in a wide range of agronomically important species;; however, SV profiles of peach and their functional impacts remain largely unexplored.ResultsHere, we present an integrated map of 202,273 SVs from 336 peach genomes. A substantial number of SVs have been selected during peach domestication and improvement, which together affect 2268 genes. Genome-wide association studies of 26 agronomic traits using these SVs identify a number of candidate causal variants. A 9-bp insertion in Prupe.4G186800, which encodes a NAC transcription factor, is shown to be associated with early fruit maturity, and a 487-bp deletion in the promoter of PpMYB10.1 is associated with flesh color around the stone. In addition, a 1.67Mb inversion is highly associated with fruit shape, and a gene adjacent to the inversion breakpoint, PpOFP1, regulates flat shape formation.ConclusionsThe integrated peach SV map and the identified candidate genes and variants represent valuable resources for future genomic research and breeding in peach.

分类号：

  • 相关文献

[1]Effect of high pressure homogenization on water-soluble pectin characteristics and bioaccessibility of carotenoids in mixed juice. Wellala C.K.D., Bi J., Liu X., Wu X., Lyu J., Liu J., Liu D., Guo C.. 2022

[2]Identification of UDP-glucosyltransferase involved in the biosynthesis of phloridzin in Gossypium hirsutum. . 2025

[3]First Report of Fusarium proliferatum Causing Fruit Rot on Muskmelon (Cucumis melo) in China. Yu X., Zhang J., Guo L., Yu A., Wang X., Xiang W., Zhao J.. 2022

[4]The roles of soluble poly and insoluble tannin in the enzymatic browning during storage of dried persimmon. Zhou M., Chen J., Bi J., Li X., Xin G.. 2022

[5]Purification of Total RNAs and Small RNAs from Fruit Tree Leaf Tissues. Ma Y., Li S.. 2022

[6]Combining novel technologies with interdisciplinary basic research to enhance horticultural crops. Jiang X., Zhang W., Fernie A.R., Wen W.. 2021

[7]Multiplex Rt-Pcr To Simultaneously Detect T.hree Viruses That Infect P each. Li, S.,Lu, M.,Li, S.,Zhou, J.,Xu, Y.,Yang, Y.,Yang, L.. 2019

[8]SSR identification of F2 progenies of E42-6 × Rizamat grape and their genetic tendency of berry shape [E42-6×里扎马特葡萄杂交F2代的SSR分子鉴定及果实形状遗传倾向]. Wu Y.,Sun F.,Wang Y.,Fan X.,Zhang Y.,Jiang J.,Luo Q.,Liu C.. 2021

[9]Effects Of Postharvest Methyl Jasmonate T.reatment On Aromatic Volatile B iosynthesis By 'Nanguoli' Fruit At Different Harvest Maturity Stages. Wei, S. W.,Wei, S. W.,Yao, G. F.,Zhang, S. L.,Zhang, H. P.,Qin, G. H.,Huang, W. J.,Qin, G. H.,Tao, S. T.,Sha, S. F.. 2017

[10]Determination Of Mancozeb Residue In F.ruit By Derivatization And A Modified Quechers Method Using Ultraperformance Liquid Chromatography-Tandem Mass Spectrometry. Xu, GF, Nie, JY, Li, HF, Yan, Z, Cheng, Y. 2017

[11]Occurrences Of The Typical Agricultural N.on-Ionic Surfactants Tristyrylphenol Ethoxylates I n Cherries (Cerasus Pseudocerasus), Peaches (Amygdalus Persica), And Kiwifruit (Actinidia Chinensis) And The Implications Of Human Exposure In China. Zhou, J, Li, CM, Jiang, ZJ, Wang, LF, Su, H, Li, H, Deng, C, Wang, Q, Wang, J, Jin, F, Hou, RY. 2019

[12]Simultaneous Determination Of Plant Growth R.egulators In Fruit By U ltra-Performance Liquid Chromatography-Tandem Mass Spectrometry Coupled With Modified Quechers Procedure. Yan, Z, Nie, JY, Cheng, Y, Li, ZX, Xu, GF, Li, HF. 2017

[13]Fine-mapping reveals that the bHLH gene Cla011508 regulates the bitterness of watermelon fruit. Gong C., Li B., Anees M., Zhu H., Zhao S., He N., Lu X., Liu W.. 2022

[14]Dietary Plants, Gut Microbiota, And O.besity: Effects And Mechanisms. Cao, SY, Zhao, CN, Xu, XY, Tang, GY, Corke, H, Gan, RY, Li, HB. 2019

[15]First Record Of Alternaria Alternata Causing Postharvest Fruit Rot Of Sweet Cherry (Prunus Avium) In China. Ahmad, T, Yang, L, Huang, SJ, Moosa, A. 2020

[16]Comparative Proteomic Analysis Of Cucumber Fruits Under Nitrogen Deficiency At The Fruiting Stage. Hao, J, Li, Q, Yu, HJ, Wang, H, Chai, L, Miao, TT, Jiang, WJ. 2021

[17]Effect of soil water content threshold on kiwifruit quality at different growth stages with drip irrigation in the humid area of Southern China. He Z., Lu X., Cui N., Jiang S., Zheng S., Chen F., Qiu R., Liu C., Fan J., Wang Y., Jin X.. 2022

[18]Insight Into The Bacterial Endophytic C.ommunities Of Peach Cultivars R elated To Crown Gall Disease Resistance. Zhang, Zhixiang,Wang, Hongqing,Li, Qian,Li, Yujia,Li, Shifang,Hartman, Wyatt H.,Li, Qian,Guo, Rongjun,Tringe, Susannah G.,Li, Qian. 2019

[19]Bacterial Leaf Spot Of Peach C.aused By Xanthomonas Arboricola P v. Pruni In China. Robe, Berhanu Lemma,Robe, Berhanu Lemma,Wang, Cheng'an,Zhang, Zhixiang,Li, Shifang. 2018

[20]Genome-Wide Identification And Expression Analysis O.f Beta-Galactosidase Family Members D uring Fruit Softening Of Peach [Prunus Persica (L.) Batsch]. Yu, Mingliang,Song, Juan,Yu, Mingliang,Zhang, Binbin,Jiang, Hang,Zhang, Binbin,Ma, Ruijuan,Guo, Shaolei,Jiang, Hang,Ma, Ruijuan,Guo, Shaolei,Jiang, Hang,Guo, Shaolei,Song, Juan. 2018

作者其他论文 更多>>