数字农科院2.0

Assessment Of Genetic Diversity, Population S.tructure, And Evolutionary Relationship O f Uncharacterized Genes In A Novel Germplasm Collection Of Diploid And Allotetraploid Gossypium Accessions Using Est And Genomic Ssr Markers

文献类型： 外文期刊

作者： Zhou, Zhongli;Xu, Yanchao;Wang, Xingxing;Wang, Kunbo;Shehzad, Muhammad;Okubazghi, Kiflom Weldu;Okubazghi, Kiflom Weldu;Liu, Fang;Khan, Muhammad Kashif Riaz;Iqbal, Muhammad Sajid;Hou, Yuqing;Ditta, Allah;Cai, Xiaoyan;Ditta, Allah

作者机构：

关键词： novel accessions; PIC; PCR; EST-gSSRs; genes; genetic distance

期刊名称： INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ISSN： 1422-0067

年卷期： 2018 年 19 卷 8 期

页码：

摘要： This study evaluated the genetic diversity and population structures in a novel cotton germplasm collection comprising 132 diploids, including Glossypium klotzschianum and allotetraploid cotton accessions, including Glossypium barbadense, Glossypium darwinii, Glossypium tomentosum, Glossypium ekmanianum, and Glossypium stephensii, from Santa Cruz, Isabella, San Cristobal, Hawaiian, Dominican Republic, and Wake Atoll islands. A total of 111 expressed sequence tag (EST) and genomic simple sequence repeat (gSSR) markers produced 382 polymorphic loci with an average of 3.44 polymorphic alleles per SSR marker. Polymorphism information content values counted 0.08 to 0.82 with an average of 0.56. Analysis of a genetic distance matrix revealed values of 0.003 to 0.53 with an average of 0.33 in the wild cotton collection. Phylogenetic analysis supported the subgroups identified by STRUCTURE and corresponds well with the results of principal coordinate analysis with a cumulative variation of 45.65%. A total of 123 unique alleles were observed among all accessions and 31 identified only in G. ekmanianum. Analysis of molecular variance revealed highly significant variation between the six groups identified by structure analysis with 49% of the total variation and 51% of the variation was due to diversity within the groups. The highest genetic differentiation among tetraploid populations was observed between accessions from the Hawaiian and Santa Cruz regions with a pairwise F-ST of 0.752 (p < 0.001). DUF819 containing an uncharacterized gene named yjcL linked to genomic markers has been found to be highly related to tryptophan-aspartic acid (W-D) repeats in a superfamily of genes. The RNA sequence expression data of the yjcL-linked gene Gh_A09G2500 was found to be upregulated under drought and salt stress conditions. The existence of genetic diversity, characterization of genes and variation in novel germplasm collection will be a landmark addition to the genetic study of cotton germplasm.

分类号：

  • 相关文献

[1]新疆无花果花叶病病毒鉴定与发生调查. 吐逊艾力·艾孜提力,侯婉莹,代毅,倪志勇,麦合木提江·米吉提. 2021

[2]西藏牛羊住肉孢子虫种类鉴别及进化分析. 单曲拉姆,朱传刚,纪荣毅,石斌,唐文强,索朗曲吉,扎西央宗,夏晨阳. 2021

[3]Natural variation of ZmCGT1 is responsible for isoorientin accumulation in maize silk. Sun X., Xue X., Wang X., Zhang C., Zheng D., Song W., Zhao J., Wei J., Wu Z., Zhang Z.. 2022

[4]Using Yield Quantitative Trait Locus T.argeted Ssr Markers To S tudy The Relationship Between Genetic Distance And Yield Heterosis In Upland Cotton (Gossypium Hirsutum). Shahzad, Kashif,Qiao, Xiuqin,Qi, Tingxiang,Wu, Jianyong,Xing, Chaozhu,Wang, Hailin,Zhang, Xuexian,Li, Xue,Zhang, Jinfa,Tang, Huini,Guo, Liping. 2019

[5]Assessing The Numbers Of Snps N.eeded To Establish Molecular I ds And Characterize The Genetic Diversity Of Soybean Cultivars Derived From Tokachi Nagaha. Liu, ZX, Li, J, Fa, XH, Htwe, NMPS, Wang, SM, Huang, W, Yang, JY, Xing, LL, Chen, LJ, Li, YH, Guan, RX, Chang, RZ, Wang, DC, Qiu, LJ. 2017

[6]Evaluation Of Genetic Diversity Among E.xotic Sorghum (Sorghum Bicolor L . Moench) Genotypes Through Molecular Based Analysis (Rapd-Pcr). Raza, A, Ashraf, F, Mehmood, SS, Khan, RSA. 2019

[7]Dna-Based Diversity Of Tea Plants G.rown In Italy. Ori, F, Ma, JQ, Gori, M, Lenzi, A, Chen, L, Giordani, E. 2017

[8]New Insights Into Mitogenomic Phylogeny A.nd Copy Number In E ight Indigenous Sheep Populations Based On The Atp Synthase And Cytochrome C Oxidase Genes. Xiao, P, Niu, LL, Zhao, QJ, Chen, XY, Wang, LJ, Li, L, Zhang, HP, Guo, JZ, Xu, HY, Zhong, T. 2018

[9]Assessing the numbers of SNPs needed to establish molecular IDs and characterize the genetic diversity of soybean cultivars derived from Tokachi nagaha. Zhangxiong Liu, Jun Li, Xuhong Fan, Nang Myint Phyu Sin Htwe, Shuming Wang, Wen Huang, Jiyu Yang, Lili Xing, Lijun Chen, Yinghui Li, Rongxia Guan, Ruzhen Chang, Dechun Wang, Lijuan Qiu. 2017

[10]Molecular Survey Of Piroplasm Species F.rom Selected Areas Of C hina And Pakistan. Hassan, MA, Liu, JL, Rashid, M, Iqbal, N, Guan, GQ, Yin, H, Luo, JX. 2018

[11]A Pcr Survey Of Vector-Borne P.athogens In Different Dog P opulations From Turkey. Guo, HP, Sevinc, F, Ceylan, O, Sevinc, M, Ince, E, Gao, Y, Moumouni, PFA, Liu, MM, Efstratiou, A, Wang, GB, Cao, SN, Zhou, M, Jirapattharasate, C, Ringo, AE, Zheng, WQ, Xuan, XN. 2017

[12]Successful Detection Of Foreign Inserts I.n Transgenic Rice Tt51-1 ( Bt63) By Rna-Sequencing Combined With Pcr. Li, YJ, Li, J, Wu, YH, Cao, YL, Zhu, L, Li, XF, Huang, SM, Wu, G. 2017

[13]Detection And Genetic Characterization Of Toxoplasma Gondii In Market-Sold Mussels (Mytilus Edulis) In Certain Provinces Of China. Cong, W, Zhang, NZ, Yuan, DQ, Zou, Y, Li, S, Liang, ZL. 2019

[14]Simultaneous Detection Of Theileria Annulata A.nd Theileria Orientalis Infections U sing Recombinase Polymerase Amplification. Hassan, MA, Liu, JL, Sajid, MS, Rashid, M, Mahmood, A, Abbas, Q, Guan, GQ, Yin, H, Luo, JX. 2018

[15]First Molecular Detection And Characterization O.f Marek'S Disease Virus I n Red-Crowned Cranes (Grus Japonensis): A Case Report. Lian, X, Ming, X, Xu, JR, Cheng, WK, Zhang, XH, Chen, HJ, Ding, C, Jung, YS, Qian, YJ. 2018

[16]First Report Of Theileria Infection Of Bactrian Camels (Camelus Bactrianus) In Xinjiang, China. Li, YQ, Li, X, Liu, JL, Wang, JM, Jia, D, Liu, AH, He, ZL, Guan, GQ, Liu, ZJ, Liu, GY, Luo, JX, Yin, H. 2019

[17]Molecular Investigation Of Piroplasma Infection I.n White Yaks (Bos G runniens) In Gansu Province, China. Li, ST, Liu, JL, Liu, AH, Li, YQ, Wang, SQ, Wang, SF, Yin, H, Luo, JX, Guan, GQ. 2017

[18]First Report Of Cucumber Mosaic V.irus Infecting Pseudostellaria Heterophylla I n China. Hou, H, Kamran, A, Jia, HY, Zhang, J, Lu, YH, Wang, FL, Yang, JG. 2019

[19]Visualising Confirmation Of The Endophytic R.elationship Of Metarhizium Anisopliae W ith Maize Roots Using Molecular Tools And Fluorescent Labelling. Wang, Feng,Wang, Guangjun,Liu, Shaofang,Nong, Xiangqun,Zhang, Zehua,Cai, Ni,McNeill, Mark,Hao, Kun,Cao, Guangchun. 2019

[20]Spatial distribution of atmospheric bioaerosols in Beijing, Hangzhou and Wuhan, China. Xuezheng Ma,Qi Zhang,Keyang Liu,Liping Zhang,Manman Zhang,Xin Zhao,Chunya Zhou,Jinke Li,Ming Cheng,Lili Li,Kongxin Hu,Jinsong Li,Tao Zheng. 2021

作者其他论文 更多>>