数字农科院2.0

Genome-Wide Characterization Of The Udp-Glycosyltransferase G.ene Family In Upland C otton

文献类型： 外文期刊

作者： Shi, Yuzhen;Niu, Doudou;Li, Pengtao;Gong, Wankui;Gong, Juwu;Yuan, Youlu;Deng, Xiaoying;Li, Shaoqi;Zhang, Qi;Li, Pengtao;Lu, Quanwei;Ge, Qun;Liu, Aiying;Chen, Quanjia;Yuan, Youlu;Zhang, Hua;Li, Junwen;Xiao, Xianghui;Liu, Ruixian;Lu, Quanwei;Shang, Haihong;Xiao, Xianghui

作者机构：

关键词： Gossypium hirsutum L; GhUGT; Phylogeny; Structure; Expression patterns; Fiber development

期刊名称： 3 BIOTECH

ISSN： 2190-572X

年卷期： 2019 年 9 卷 12 期

页码：

摘要： Uridine diphosphate (UDP)-glycosyltransferases (UGTs) involved in many metabolic processes are ubiquitous in plants, animals, microorganisms and other organisms and are essential for their growth and development. Upland cotton contains a large number of UGT genes. In this study, we aimed to identify UGT family members in the genome of upland cotton (Gossypium hirsutum L.) and analyze their expression patterns. Bioinformatics methods were used to identify UGT genes from the whole genome of upland cotton (Gossypium hirsutum L. acc. TM-1). Phylogenetic analysis was conducted based on alignment of UGT proteins from upland cotton, and the gene structure, motif and chromosome localization were analyzed for the H subgroup of the UGT family. And the physical and chemical properties and expressions of the genes in the H subgroup of this family were also analyzed. A total of 274 UGT genes were identified from the whole genome of upland cotton and were divided into nine subgroups based on phylogenetic analyses. In subgroup H, 36 genes were distributed on 18 chromosomes. The subfamily genes were simple in the structure, 19 of its members contained two introns, and the others contained only one intron. The qRT-PCR results and transcriptomic data indicated that most of the genes had a wide range of tissue expression characteristics. And the phylogenetic analysis results and expression profiles of these genes revealed tissues and different UGT genes from this crop. Taking RNA-seq, RT-qPCR, and quantitative trait locus (QTL) mapping together, our results suggested that GhUGT6 and GhUGT105 in subgroup H of the GhUGT gene family could be potential candidate genes for cotton yield, and GhUGT16, GhUGT103 might play a vital role in fiber development.

分类号：

  • 相关文献

[1]Genome-Wide Identification Of The Mikc-Type M.ads-Box Gene Family In G ossypium Hirsutum L. Unravels Their Roles In Flowering. Lu, Lili,Qanmber, Ghulam,Liu, Zhao,Li, Jie,Li, Yi,Yang, Zuoren,Yu, Daoqian,Yang, Zhaoen,Ren, Zhongying,Wang, Lingling,Ren, Zhongying,Yang, Zhaoen,Li, Fuguang,Chen, Quanjia,Li, Changfeng,Li, Changfeng,Li, Fuguang,Zhang, Hua,Yang, Zuoren,Yu, Daoqian. 2017

[2]A Genome-Scale Analysis Of The P.in Gene Family Reveals I ts Functions In Cotton Fiber Development. Zhang, Yuzhou,Zhang, Yuzhou,Zhao, Peng,Yang, Zuoren,Pang, Chaoyou,Yu, Jianing,Huang, Gai,He, Peng,Wang, Limin,Xiao, Hui,Xiao, Guanghui. 2017

[3]Comprehensive Analyses Of Zfp Gene F.amily And Characterization Of E xpression Profiles During Plant Hormone Response In Cotton. Pang, Chaoyou,Wang, Zihua,Xiao, Guanghui,Yu, Jianing,Yang, Yan,He, Peng,Ma, Yueqin,Xiao, Guanghui,Zhang, Li,Pang, Chaoyou,Yuan, Yi,Zhao, Peng. 2019

[4]Genome-Wide Identification And Analysis Of T.he Evolution And Expression P atterns Of The Cellulose Synthase Gene Superfamily In Gossypium Species. Zhang, Shuya,Zou, Xianyan,Yuan, Youlu,Zhang, Qi,Wang, Yanling,Li, Junwen,Duan, Li,Zhen, Zhang,Liu, Ruixian,Shang, Haihong,Lei, Kang,Gong, Wankui,Liu, Aiying,Jiang, Xiao,Jia, Tingting,Shi, Yuzhen,Zhang, Lipeng,Gong, Juwu,Ge, Qun,Fan, Senmiao. 2018

[5]Molecular traits and functional analysis of Rapid Alkalinization Factors (RALFs) in four Gossypium species. Lin H., Han X., Feng X., Chen X., Lu X., Yuan Z., Li Y., Ye W., Yin Z.. 2022

[6]Genome-wide identification studies – A primer to explore new genes in plant species. Safder I., Shao G., Sheng Z., Hu P., Tang S.. 2022

[7]The dynamics of genome size and GC contents evolution in genus Nicotiana [A dinâmica do tamanho do genoma e a evolução dos conteúdos de GC no gênero Nicotiana]. Hussain Z., Sun Y., Shah S.H., Khan H., Ali S., Iqbal A., Zia M.A., Ali S.S.. 2023

[8]Identification and Characterization of Abiotic Stress–Responsive NF-YB Family Genes inMedicago. Du W., Yang J., Li Q., He C., Pang Y.. 2022

[9]Origin and Phylogeography of Chinese Cereal Cyst Nematode Heterodera avenae Revealed by Mitochondrial COI Sequences. Shao H., Xue Q., Yao K., Cui J., Huang W., Kong L., Li C., Li H., Peng D., Smiley R.W., Peng H.. 2022

[10]Identification Of Candidate Genes For K.ey Fibre-Related Qtls And D erivation Of Favourable Alleles In Gossypium Hirsutum Recombinant Inbred Lines With G. Barbadense Introgressions. Song, Zhangqiang,Jiao, Mengjia,Zhang, Jingxia,Wang, Furong,Zhang, Jun,Fan, Shoujin,Zhao, Chengjie,Wang, Jingjing,Du, Zhaohai,Zhang, Jun,Zhou, Juan,Wang, Furong,Zhang, Chuanyun,Chen, Yu,Gong, Juwu,Yuan, Youlu,Liu, Aiying. 2019

[11]In vitro assay for 2,4-D resistance in transgenic cotton. BAO-HONG ZHANG,HONG-MEI WANG,FANG LIU,YUN-HAI LI,ZHENG-DE LIU.

[12]High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L. Xiaoyun Jia,Chaoyou Pang,Hengling Wei,Hantao Wang,Qifeng Ma,Jilong Yang,Shuaishuai Cheng,Junji Su,Shuli Fan,Meizhen Song,Nusireti Wusiman,Shuxun Yu. 2016

[13]GhNAC12, a neutral candidate gene, leads to early aging in cotton (Gossypium hirsutum L). Fengli Zhao,JianhuiMa,Libei Li,Shuli Fan,Yaning Guo,Meizhen Song,Hengling Wei,Chaoyou Pang,Shuxun Yu. 2016

[14]Genome-wide Identification and analysis of the stress-resistance function of the TPS (Trehalose-6-Phosphate Synthase) gene family in cotton. Min Mu,Xu-Ke Lu,Jun-Juan Wang,De-Long Wang,Zu-Jun Yin,Shuai Wang,Wei-Li Fan,Wu-Wei Ye. 2016

[15]Identification of favorable SNP alleles and candidate genes for traits related to early maturity via GWAS in upland cotton. Junji Su,Chaoyou Pang,Hengling Wei,Libei Li,Bing Liang,Caixiang Wang,Meizhen Song,Hantao Wang,Shuqi Zhao,Xiaoyun Jia,Guangzhi Mao,Long Huang,Dandan Geng,Chengshe Wang,Shuli Fan. 2016

[16]Effects of kanamycin on tissue culture and somatic embryogenesis in cotton. Bao-Hong Zhang,Fang Liu,Zhi-Hong Liu,Hong-Mei Wang,Chang-Bing Yao.

[17]GhRCD1 regulates cotton somatic embryogenesis by modulating the GhMYC3-GhMYB44-GhLBD18 transcriptional cascade. Yuan, Jiachen,Liu, Xingxing,Zhao, Hang,Wang, Ye,Wei, Xi,Wang, Peng,Zhan, Jingjing,Liu, Lisen,Li, Fuguang,Ge, Xiaoyang. 2023

[18]Itraq Protein Profile Analysis Of Y.oung And Old Leaves O f Cotton (Gossypium Hirsutum L.) Differing In Response To Alkali Stress. Hu, YJ, Zhao, L, Zhou, J, Zhong, XL, Gu, FX, Liu, Q, Li, HR, Guo, R. 2019

[19]Oil candidate genes in seeds of cotton (Gossypium hirsutum L.) and functional validation of GhPXN1. Chenxu Gao,Xiao Han,Zhenzhen Xu,Zhaoen Yang,Qingdi Yan,Yihao Zhang,Jikun Song,Hang Yu,Renju Liu,Lan Yang,Wei Hu,Jiaxiang Yang,Man Wu,Jisheng Liu,Zongming Xie,Jiwen Yu,Zhibin Zhang. 2023

[20]GhIMP10D, an inositol monophosphates family gene, enhances ascorbic acid and antioxidant enzyme activities to confer alkaline tolerance in Gossypium hirsutum L.. Yapeng Fan,Fanjia Peng,Ruifeng Cui,Shuai Wang,Yupeng Cui,Xuke Lu,Hui Huang,Kesong Ni,Xiaoyu Liu,Tiantian Jiang,Xixian Feng,Mengyue Liu,Yuqian Lei,Wenhua Chen,Yuan Meng,Mingge Han,Delong Wang,Zujun Yin,Xiugui Chen,Junjuan Wang,Yujun Li,Lixue Guo,Lanjie Zhao,Wuwei Ye. 2023

作者其他论文 更多>>