数字农科院2.0

An Integrated Transcriptome And Proteome A.nalysis Reveals New Insights I nto Russeting Of Bagging And Non-Bagging Golden Delicious Apple

文献类型： 外文期刊

作者： Yuan, GP; Bian, SX; Han, XL; He, SS; Liu, K; Zhang, CX; Cong, PH

作者机构：

关键词： fruit russeting formation; transcriptome; proteome; bagging and non-bagging; "Golden Delicious" apple; lignin biosynthesis

期刊名称： INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ISSN：

年卷期： 2019 年 20 卷 18 期

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收录情况： JCR（2021版）

摘要： Apple skin russeting naturally occurs in many varieties, particularly in Golden Delicious and its pedigree, and is regarded as a non-invasive physiological disorder partly caused by excessive deposition of lignin. However, the understanding of its molecular mechanism is still limited. In this study, we used iTRAQ (isobaric tags for relative and absolute quantitation) and RNA-seq to detect the changes in the expression levels of genes and proteins in three developmental stages of russeting formation, in russeted (non-bagging) and non-russeted (bagging) skin of Golden Delicious apple. 2856 differentially expressed genes and 942 differentially expressed proteins in the comparison groups were detected at the transcript level and protein level, respectively. A correlation analysis of the transcriptomics and proteomics data revealed that four genes (MD03G1059200, MD08G1009200, MD17G1092400, and MD17G1225100) involved in lignin biosynthesis are significant changed during apple russeting formation. Additionally, 92 transcription factors, including 4 LIM transcription factors, may be involved in apple russeting formation. Among them, one LIM transcription factor (MD15G1068200) was capable of binding to the PAL-box like (CCACTTGAGTAC) element, which indicated it was potentially involved in lignin biosynthesis. This study will provide further views on the molecular mechanisms controlling apple russeting formation.

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