数字农科院2.0

Restriction Site-Associated Dna Sequencing Reveals The Molecular Genetic Diversity Of Grapevine And Genes Related To White Rot Disease

文献类型： 外文期刊

作者： Zhang, Y; Fan, XC; Li, YF; Sun, HS; Jiang, JF; Liu, CH

作者机构：

关键词： Rad-Seq; Chinese Wild Vitis Species; Population Structure; Resistance; Gwas (Genome-Wide Association Study)

期刊名称： SCIENTIA HORTICULTURAE

ISSN： 0304-4238

年卷期： 2020 年 261 卷

页码：

收录情况： JCR（2021版）

摘要： Grapevine (Vitis spp.) is an important crop worldwide, but its growth, fruit quality, and yield are frequently reduced by pathogens. Admixture of resistance genes is an effective method to breed new varieties. Wild grapevine populations are very important subjects for grapevine research, given their germplasmic resistance to various diseases, especially white rot disease caused by Coniella diplodiella. However, molecular and sequencing research is still required to fully understand the relationships among Vitis spp., particularly among Chinese Vitis species. We analyzed 88,877 single nucleotide polymorphisms (SNPs) from 386 grapevine genotypes through restriction site-associated DNA sequencing. Overall, Chinese Vitis spp. had considerably less linkage disequilibrium and exhibited stronger resistance to white rot disease than their European congeners. Association analysis revealed six SNPs associated with eight candidate genes linked to white rot resistance that were up-regulated by the pathogen. In resistant Vitis spp., genes XM_002272404.2 (WAT1-related protein At3g30340-like), XM_002278827.2 (receptor-like protein kinase HSL1), XM_002281911.3 (ethylene-responsive transcription factor ERF105-like), XM_002281568.4 (leucine rich repeat receptor-like serine/threonine-protein kinase At1g74360-like), and XM_003634259.2 (zinc finger RNA-binding protein) were more up-regulated by the pathogen than in susceptible Vitis species. The present results clarify the genetic basis of the geographical distribution, classification, and resistance traits of Chinese Vitis spp., thereby contributing to the use of wild Chinese Vitis spp. in breeding.

分类号：

  • 相关文献

[1]High-density genetic map construction and QTLs analysis of grain yield-related traits in Sesame (Sesamum indicum L.) based on RAD-Seq techonology. Wu, Kun,Liu, Hongyan,Yang, Minmin,Wu, Wenxiong,Zuo, Yang,Zhao, Yingzhong,Tao, Ye,Ma, Huihui. 2014

[2]RAD-Seq-Based High-Density Linkage Maps Construction and Quantitative Trait Loci Mapping of Flowering Time Trait in Alfalfa (Medicago sativa L.). Jiang, Xueqian,Yang, Tianhui,Zhang, Fan,Yang, Xijiang,Yang, Changfu,He, Fei,Long, Ruicai,Gao, Ting,Jiang, Yiwei,Yang, Qingchuan,Wang, Zhen,Kang, Junmei. 2022

[3]Genetic And Fruit Trait Differences B.etween Chinese Elite Lines/Varieties A nd American Varieties Of Processing Tomato. Liu, Xiaoxi,Zhang, Hongchi,Yang, Wencai,Wang, Liang,Li, Yan. 2017

[4]Inter- And Intra-Specific Genetic Diversity In Diospyros Using Scot And Irap Markers. Hu, Chaoqiong,Zhang, Pingxian,Yang, Yong,Chachar, Sadaruddin,Guan, Changfei,Wang, Renzi. 2020

[5]Analysis Of Genetic Diversity And P.opulation Structure In Upland C otton (Gossypium Hirsutum L.) Germplasm Using Simple Sequence Repeats. Seyoum, Mulugeta,Du, Xiong Ming,He, Shou Pu,Jia, Yin Hua,Pan, Zhaoe,Sun, Jun Ling,Seyoum, Mulugeta. 2018

[6]Genetic Diversity A Population Structure A.nalysis Of A Accessions I n The Chinese Cowpea [Vigna Unguiculata (L.) Walp.] Germplasm Collection. Wang, Lixia,Wang, Suhua,Wang, Ming Li,Cheng, Xuzhen,Chen, Honglin,Chen, Hong,Hu, Liangliang. 2017

[7]Regional-Scale Differentiation And Phylogeography Of A. Desert Plant Allium M ongolicum (Liliaceae) Inferred From Chloroplast Dna Sequence Variation. Yu, Qiushi,Zhang, Qian,Zhang, Yinghua,Yu, Qiushi,Fan, Baoli,Hu, Jing,Hu, Xiaoke. 2017

[8]Genetic Diversity, Population Structure, And L.inkage Disequilibrium Of An A ssociation-Mapping Panel Revealed By Genome-Wide Snp Markers In Sesame. Liu, Yanyang,Mei, Hongxian,Zheng, Yongzhan,Cui, Chengqi,Zheng, Yongzhan,Zhang, Haiyang,Zhang, Haiyang,Zhang, Haiyang,Liu, Yanyang,Mei, Hongxian,Liu, Yanyang,Mei, Hongxian,Zheng, Yongzhan. 2017

[9]Population Structure And Genetic Basis O.f The Agronomic Traits O f Upland Cotton In China Revealed By A Genome-Wide Association Study Using High-Density Snps. Nie, Xinhui,Lin, Zhongxu,Shen, Chao,You, Chunyuan,Nie, Xinhui,Huang, Cong,Zhang, Xianlong,Zhao, Wenxia,Li, Wu. 2017

[10]Genetic Diversity, Population Structure, And L.inkage Disequilibrium Of An A ssociation-Mapping Panel Revealed By Genome-Wide Snp Markers In Sesame (Vol 8, 1189, 2017). Zheng, Yongzhan,Zhang, Haiyang,Cui, Chengqi,Liu, Yanyang,Mei, Hongxian. 2017

[11]Genetic Diversity, Germplasm Identification And P.opulation Structure Of Diospyros K aki Thunb. From Different Geographic Regions In China Using Ssr Markers. Zhang, Pingxian,Chachar, Sadaruddin,Guan, Changfei,Riaz, Adeel,Wang, Renzi,Hu, Chaoqiong,Yang, Yong. 2019

[12]Analysis Of Genetic Diversity And P.opulation Structure Of A W orldwide Collection Of Corchorus Olitorius L. Germplasm Using Microsatellite Markers. Yang, ZM, Lu, RK, Dai, ZG, Yan, A, Chen, JQ, Bai, ZB, Xie, DW, Tang, Q, Cheng, CH, Xu, Y, Su, JG. 2018

[13]Genome-Wide Assessment Of Population Structure, L.inkage Disequilibrium And Resistant Q tls In Chinese Wild Grapevine. Zhang, Y, Feng, L, Fan, XC, Jiang, JF, Zheng, XB, Sun, HS, Liu, CH. 2017

[14]Whole Genome Deep Sequencing Revealed H.ost Impact On Population S tructure, Variation And Evolution Of Rice Stripe Virus. Zhou, Xueping,Liang, Jingting,Wu, Sanling,Jiang, Jun,Zhou, Xueping,Wu, Jianxiang,Lu, Lina. 2018

[15]Genome-Wide Single-Nucleotide Polymorphism Data Unveil A.dmixture Of Chinese Indigenous C hicken Breeds With Commercial Breeds. Nie, CS, Almeida, P, Jia, YX, Bao, HG, Ning, ZH, Qu, LJ. 2019

[16]Population Genetic Analysis Of Theileria A.nnulata From Six Geographical R egions In China, Determined On The Basis Of Micro- And Mini-Satellite Markers. Yin, FY, Liu, ZJ, Liu, JL, Liu, AH, Salih, DA, Li, YQ, Liu, GY, Luol, JX, Guan, GQ, Yin, H. 2018

[17]Species Identification, Genetic Diversity And P.opulation Structure Of Sweet C herry Commercial Cultivars Assessed By Ssrs And The Gametophytic Selfincompatibility Locus. Liu, CL, Qi, XL, Song, LL, Li, YH, Li, M. 2018

[18]Evaluation Of Genetic Diversity And S.tructure Of Vietnamese Goat P opulations Using Multi Locus Microsatellite Markers. Thuy, LT, Van Binh, D, Binh, NT, Minh, LQ, Thuy, TTT, Ton, ND, Van Ba, N, Han, JL, Periasamy, K. 2017

[19]Genetic diversity and a population structure analysis of accessions in the Chinese cowpea [Vigna unguiculata (L.) Walp.] germplasm collection. Honglin Chena, Hong Chen, Liangliang Hua, Lixia Wang, Suhua Wang, Ming Li Wang, Xuzhen Cheng. 2017

[20]Distribution, genetic diversity and population structure of aegilops tauschii coss. In major wheat-growing regions in China. Yu Haiyan,Yang Juan,Cui Hailan,Abbas Adeel,Wei Shouhui,Li Xiangju. 2021

作者其他论文 更多>>