数字农科院2.0

Gwas And Co-Expression Network Combination Uncovers Multigenes With Close Linkage Effects On The Oleic Acid Content Accumulation In Brassica Napus

文献类型： 外文期刊

作者： Yao, M; Guan, M; Zhang, ZQ; Zhang, QP; Cui, YX; Chen, H; Liu, W; Jan, HU; Voss-Fels, KP; Werner, CR; He, X; Liu, ZS; Guan, CY; Snowdon, RJ; Hua, W; Qian, LW

作者机构：

关键词： Oleic Acid; Gwas; Haplotype; Co-Expression Network; Brassica Napus

期刊名称： BMC GENOMICS

ISSN： 1471-2164

年卷期： 2020 年 21 卷 1 期

页码：

收录情况： JCR（2021版）

摘要： Background Strong artificial and natural selection causes the formation of highly conserved haplotypes that harbor agronomically important genes. GWAS combination with haplotype analysis has evolved as an effective method to dissect the genetic architecture of complex traits in crop species. Results We used the 60 K Brassica Infinium SNP array to perform a genome-wide analysis of haplotype blocks associated with oleic acid (C18:1) in rapeseed. Six haplotype regions were identified as significantly associated with oleic acid (C18:1) that mapped to chromosomes A02, A07, A08, C01, C02, and C03. Additionally, whole-genome sequencing of 50 rapeseed accessions revealed three genes (BnmtACP2-A02, BnABCI13-A02 and BnECI1-A02) in the A02 chromosome haplotype region and two genes (BnFAD8-C02 and BnSDP1-C02) in the C02 chromosome haplotype region that were closely linked to oleic acid content phenotypic variation. Moreover, the co-expression network analysis uncovered candidate genes from these two different haplotype regions with potential regulatory interrelationships with oleic acid content accumulation. Conclusions Our results suggest that several candidate genes are closely linked, which provides us with an opportunity to develop functional haplotype markers for the improvement of the oleic acid content in rapeseed.

分类号：

  • 相关文献

[1]Genome-wide association study reveals novel QTLs and candidate genes for seed vigor in rice. Dai Liping, Lu Xueli, Shen Lan, Guo Longbiao, Zhang Guangheng, Gao Zhenyu, Zhu Li, Hu Jiang, Dong Guojun, Ren Deyong, Zhang Qiang, Zeng Dali, Qian Qian, Li Qing. 2022

[2]甘蓝型油菜ACCase、DGAT2和船PC基因对氮素用量的应答. 闫贵欣,陈碧云,许鲲,高桂珍,吕培军,伍晓明,李锋,李俊. 2012

[3]Identification of UDP-glucosyltransferase involved in the biosynthesis of phloridzin in Gossypium hirsutum. . 2025

[4]Co-Expression Analysis Aids In The I.dentification Of Genes In T he Cuticular Wax Pathway In Maize. Lu, Xiaoduo,Qin, Yang,He, Cheng,Wei, Hairong,Gunasekara, Chathura J.,Schnable, Patrick S.,Park, Woojun D.,Park, Woojun D.,Sun, Minghao,Sun, Minghao,Li, Jian,Yeh, Cheng-Ting,Zheng, Jun,Zeng, Erliang,Zeng, Erliang,Zhang, Chunyi,Lin, Guifang,Liu, Sanzhen,Li, Jian,Wei, Hairong,Wang, Guoying. 2019

[5]Genome-Wide Characterization And Phylogenetic Analysis O.f Gsk Gene Family I n Three Species Of Cotton: Evidence For A Role Of Some Gsks In Fiber Development And Responses To Stress. Yang, Zuoren,Lu, Lili,Qanmber, Ghulam,Wang, Lingling,Li, Yi,Gong, Qian,Li, Fuguang,Lin, Yongjun,Wang, Lingling,Yu, Daoqian,Zhang, Bin,Wang, Lingling,Liu, Ji,Yang, Zhaoen,Lin, Yongjun. 2018

[6]Effects of Different Oils on the Fatty Acid Profiles of Culture Medium and Ruminal Microorganisms in vitro. Wang, M. Z.,Wang, H. R.,Yu, L. H.,Bu, D. P.,Wang, J. Q.. 2012

[7]Genome wide association study identifies candidate genes related to fatty acid components in upland cotton (Gossypium hirsutum L.). Yue Xin,Jianjiang Ma,Jikun Song,Bing Jia,Shuxian Yang,Luyao Wu,Li Huang,Wenfeng Pei,Li Wang,Jiwen Yu,Man Wu. 2022

[8]Production of capsaicinoid nonivamide from plant oil and vanillylamine via whole-cell biotransformation. Jianzhong Ge,Jie Zhang,Xiaolu Wang,Yingguo Bai,Yaru Wang,Yuan Wang,Tao Tu,Xing Qin,Xiaoyun Su,Huiying Luo,Bin Yao,Huoqing Huang. 2023

[9]Genome-Wide Analysis Of Long Non-Coding Rnas (Lncrnas) In Two Contrasting Rapeseed (Brassica Napus L.) Genotypes Subjected To Drought Stress And Re-Watering. Tan, XY, Li, S, Hu, LY, Zhang, CL. 2020

[10]Transcriptome Analysis of Ginkgo biloba L. Leaves across Late Developmental Stages Based on RNA-Seq and Co-Expression Network. Hailin Liu,Xin Han,Jue Ruan,Lian Xu,Bing He. 2021

[11]The combination of lactoferrin and linolenic acid inhibits colorectal tumor growth through activating AMPK/JNK-related apoptosis pathway. Qianqian Yao,Huiying Li,Linlin Fan,Shengnan Huang,Jiaqi Wang,Nan Zheng. 2021

[12]Influence of a Combination of Glycerol Polyethylene Glycol Ricinoleate and Bi-Distilled Oleic Acid in Powder Form on Growth Performance, Nutrient Digestibility, Excreta Nitrogen and Liver Fatty Acid Profile of Broilers Fed Reduced-Energy Diets. Luca Marchetti,Raffaella Rebucci,Caterina Piantoni,Paola Antonia Corsetto,Angela Maria Rizzo,Haijun Zhang,Xianren Jiang,Valentino Bontempo. 2025

[13]A comparative transcriptomic analysis provides new insights into the ecological adaptations in Ichthyophis bannanicus. Jieling Lai,Zhen Wang,Guifen Li,Shaoquan Meng,Linzhuang Bai,Fengli Zhao,Yongjian Bei. 2025

[14]Ecotilling Reveals Natural Allelic Variations I.n Starch Synthesis Key G ene Tassiv And Its Haplotypes Associated With Higher Thousand Grain Weight. Irshad, Ahsan,Liu, Luxiang,Guo, Huijun,Ding, Yuping,Gu, Jiayu,Zhang, Shunlin,Zhao, Linshu,Zhao, Shirong,Ma, Youzhi,Xie, Yongdun,Xiong, Hongchun. 2019

[15]Natural Variations Of Ft Family G.enes In Soybean Varieties C overing A Wide Range Of Maturity Groups. Abdul, Mohammad,Song, Wenwen,Zhang, Chengsheng,Han, Tianfu,Khan, Awal,Wu, Cunxiang,Jiang, Bingjun,Sun, Shi,Wu, Tingting,Zhang, Shouwei. 2019

[16]Single-Nucleotide Polymorphisms, Mapping And Association A.nalysis Of 1-Fft-A1 Gene I n Wheat. Mao Xin-guo,Yue Ai-qin,Yue Ai-qin,Li Run-zhi,Chang Xiao-ping,Jing Rui-lian,Li Ang. 2017

[17]The Biotypes And Host Shifts O.f Cotton-Melon Aphids Aphis G ossypii In Northern China. Zhang Li-juan,Lu Li-min,Cui Jin-jie,Zhu Xiang-zhen,Wang Chun-yi,Luo Jun-yu,Wang Li,Zhang Shuai. 2018

[18]A Class B Heat Shock F.actor Selected For During S oybean Domestication Contributes To Salt Tolerance By Promoting Flavonoid Biosynthesis. Lai, Yong:Cai,Li, Wei,Wang, Guo:Dong,Hu, Yang,Han, Jia:Qi,Jin, Meng,Ma, Biao,Li, Wei,Chen, Shou:Yi,Jin, Meng,Zhang, Jin:Song,Yu, De:Yue,Bian, Xiao:Hua,Han, Jia:Qi,Wei, Wei,Zhang, Wan:Ke,Hu, Yang,Zhang, Jin:Song,Lu, Xiang,Niu, Can:Fang,Lu, Xiang,Tao, Jian:Jun,Zhou, Bin,Ma, Biao,Bian, Xiao:Hua,Qin, Hao. 2019

[19]Elite Haplotypes Of A Protein K.inase Gene Tasnrk2.3 Associated W ith Important Agronomic Traits In Common Wheat. Miao, LL, Mao, XG, Wang, JY, Liu, ZC, Zhang, B, Li, WY, Chang, XP, Reynolds, M, Wang, ZH, Jing, RL. 2017

[20]Identification Of Porcine Ctla4 Gene P.olymorphism And Their Association W ith Piglet Diarrhea And Performance Traits. Gao, XW, Guo, DC, Kou, MX, Xing, GL, Zha, AD, Yang, XQ, Wang, Xb, Di, SW, Cai, JC, Niu, BY. 2019

作者其他论文 更多>>