数字农科院2.0

Complete chloroplast genome sequence of rapeseed (Brassica napus L.) and its evolutionary implications

文献类型： 外文期刊

作者： Hu, Zhi-Yong;Hua, Wei;Huang, Shun-Mou;Wang, Han-Zhong;Hu, Zhi-Yong;Hua, Wei;Huang, Shun-Mou;Wang, Han-Zhong

作者机构：

关键词： intergenic spacer;simple sequence repeat;gene: intron;chloroplast DNA: large single copy region;small single copy region;Genbank sequence data;phylogenetic relationship;phylogeny;chloroplast genome;evolutionary implication;gene pool;structural organization

期刊名称： GENETIC RESOURCES AND CROP EVOLUTION

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The complete nucleotide sequence of the rapeseed (Brassica napus L.) chloroplast genome (cpDNA) was determined. The 152,860 bp cpDNA contained a pair of 26,035 bp inverted repeat regions (IR), which are separated by small and large single copy regions (SSC and LSC) of 83,030 and 17,760 bp, respectively. The major portion (56.4%) of the B. napus cpDNA consists of gene coding regions, while intergenic spacers make up 43.6% of the complete genome. The average AT content of the B. napus cpDNA is 63.7% and for the LSC, SSC and IR region is 65.9, 70.8 and 57.7%, respectively. Fifteen genes contained one intron, while three genes had two introns. In total, 86 simple sequence repeats were identified. The detailed comparison of the B. napus with one of its putative parents, B. rapa L. cpDNA indicated that the two species were highly similar. The entire gene pool and relative positions of 113 individual genes were identical to those of B. rapa cpDNA. The sequence divergence analysis of B. napus and B. rapa showed only 0.133% in the coding regions, 0.275% in the intron regions, and 0.348% in the intergenic spacer regions. The phylogenies based on 61 protein coding genes from 48 cpDNA sequences provided strong support for monophyly of many major classes of angiosperms and provided support that Amborella could be a sister to all other angiosperms. Our analysis also supported that B. napus is the closest species to B. rapa and B. rapa could be the mathernal parent of B. napus cv. zy036.

分类号： S18

  • 相关文献

[1]Construction of a Linkage Map and Identification of Resistance Gene Analog Markers for Root-knot Nematodes in Wild Peach, Prunus kansuensis. Cao, Ke,Wang, Lirong,Zhu, Gengrui,Fang, Weichao,Chen, Chenwen,Zhao, Pei.

[2]The Complete Chloroplast Genome Sequences of Eight Fagopyrum Species: Insights Into Genome Evolution and Phylogenetic Relationships. Yu Fan,Ya’nan Jin,Mengqi Ding,Yu Tang,Jianping Cheng,Kaixuan Zhang,Meiliang Zhou. 2021

[3]Comparative and Phylogenetic Analysis of Complete Chloroplast Genomes in Leymus (Triticodae, Poaceae). Wu Z.,Tian C.,Yang Y.,Li Y.,Liu Q.,Li Z.,Jin K.. 2022

[4]Characterization of the complete chloroplast genome of Elymus kamoji (Ohwi) S. L. Chen. Minjie Liu,Yan Zhang,Yongchao Zhang,Guangxin Cui,Qingping Zhou,Xiaoxing Wei. 2021

[5]The Complete Chloroplast Genome Sequences of Eight Fagopyrum Species: Insights Into Genome Evolution and Phylogenetic Relationships. Yu Fan,Ya’nan Jin,Mengqi Ding,Yu Tang,Jianping Cheng,Kaixuan Zhang,Meiliang Zhou. 2022

[6]Characterization of the complete chloroplast genome of Alopecurus pratensis L. (Poaceae). Junfeng Yang,Wenxuan Du,Yongzhen Pang. 2021

[7]Complete Chloroplast Genome of Corethrodendron fruticosum (Papilionoideae: Fabaceae): Comparative and Phylogenetic Analysis. Niu, Tianxiu,Tian, Chunyu,Yang, Yanting,Liu, Qian,Liu, Lemeng,Tao, Qibo,Li, Zhiyong,Wu, Zinian. 2023

[8]Characterization and Comparative Analysis of Complete Chloroplast Genomes of Four Bromus (Poaceae, Bromeae) Species. Shichao Li,Chunyu Tian,Haihong Hu,Yanting Yang,Huiling Ma,Qian Liu,Lemeng Liu,Zhiyong Li,Zinian Wu. 2024

[9]Molecular diversity and phylogeny of rhizobia associated with Lablab purpureus (Linn.) grown in Southern China. Chang, Yue Li,Wang, En Tao,Sui, Xin Hua,Chen, Wen Xin,Wang, En Tao,Zhang, Xiao Xia.

[10]Complete chloroplast genome of Calligonum mongolicum Turcz. and comparative analysis with other Calligonum species. Huirong Duan,Qian Zhang,Fuping Tian,Yu Hu,Chunmei Wang,Yuan Lu,Huijun Yuan,Hongshan Yang,Guangxin Cui. 2022

[11]A complete mitochondrial genome for fragrant Chinese rosewood (Dalbergia odorifera, Fabaceae) with comparative analyses of genome structure and intergenomic sequence transfers. Zhou Hong,Xuezhu Liao,Yuanjun Ye,Ningnan Zhang,Zengjiang Yang,Weidong Zhu,Wei Gao,Joel Sharbrough,Luke R. Tembrock,Daping Xu,Zhiqiang Wu. 2021

[12]Sequencing, Assembly, and Comparative Evolutionary Analysis of the Chloroplast Genome of Kenaf (Hibiscus cannabinus L.). Zhu, Ziyi,Liu, Juan,Tang, Shenyue,Ji, Qingqing,An, Xingcai,Dong, Junyuan,Luo, Xiahong,Chen, Changli,Liu, Tingting,Zou, Lina,Li, Shaocui,Luan, Mingbao,An, Xia. 2025

[13]Genetic polymorphism of ferula mushroom growing on Ferula sinkiangensis. Zhang, JX,Huang, CY,Ng, TB,Wang, HX.

[14]Identification and Analysis of Genetic Diversity Structure Within Pisum Genus Based on Microsatellite Markers. Zong Xu-xiao,Guan Jian-ping,Wang Shu-min,Ford, Rebecca,Redden, Robert R.. 2009

[15]Identification of quantitative trait loci for resistance to whitebacked planthopper, Sogatella furcifera, from an interspecific cross Oryza sativa x O. rufipogon. Chen, Jie,Huang, De-Run,Wang, Lei,Liu, Guang-Jie,Zhuang, Jie-Yun.

[16]Genetic diversity and relationship of global faba bean (Vicia faba L.) germplasm revealed by ISSR markers. Wang, Hai-fei,Zong, Xu-xiao,Guan, Jian-ping,Yang, Tao,Sun, Xue-lian,Ma, Yu,Redden, Robert. 2012

[17]Protecting Local Breeds of Livestock in NW China. Lang Xia,Wang Cailian,Squires, Victor. 2010

[18]Evolution of H9N2 influenza viruses from domestic poultry in Mainland China. Li, CJ,Yu, KZ,Tian, GB,Yu, DD,Liu, LL,Jing, B,Ping, JH,Chen, HL.

[19]Thai Local Chicken Breeds, Chee Fah and Fah Luang, Originated from Chinese Black-Boned Chicken with Introgression of Red Junglefowl and Domestic Chicken Breeds. Trifan Budi,Worapong Singchat,Nivit Tanglertpaibul,Wongsathit Wongloet,Aingorn Chaiyes,Nattakan Ariyaraphong,Worawit Thienpreecha,Wannapa Wannakan,Autchariyapron Mungmee,Thanyapat Thong,Pish Wattanadilokchatkun,Thitipong Panthum,Syed Farhan Ahmad,Artem Lisachov,Narongrit Muangmai,Rattanaphon Chuenka,Pollavat Prapattong,Mitsuo Nunome,Wiyada Chamchumroon,Kyudong Han,Santi Pornpipatsiri,Thepchai Supnithi,Min Sheng Peng,Jian Lin Han,Yoichi Matsuda,Prateep Duengkae,Phuechphol Noinafai,Kornsorn Srikulnath. 2023

[20]Study on the origin of Asian cultivated rice based on 15 domestication regions. Sun, Tingting,Lu, Hongwei,Wang, Kejian. 2023

作者其他论文 更多>>