数字农科院2.0

Genome-wide identification, phylogenomics, and expression analysis of benzoxazinoids gene family in rice (Oryza sativa)

文献类型： 外文期刊

作者： Vincent Ninkuu;Jianpei Yan;Zhenchao Fu;Tengfeng Yang;Lin Zhang;Jie Ren;Guangyue Li;Hongmei Zeng

作者机构：

关键词： Benzoxazinoids;Gene expression;Phylogenetics;Physiochemical parameters

期刊名称： Plant Stress

ISSN： 2667-064X

年卷期： 2023 年 10 卷

页码：

收录情况： 不在遴选数据库范围（2023版）

摘要： Benzoxazinoids (BXs) are potent secondary metabolites that affect plants' biotic and abiotic interactions. Extensive studies on the functions of benzoxazinoids in mediating biotic and abiotic stressors have been reported in maize, wheat, and rye. However, little is known about BXs biosynthesis in rice. This study presents a genome-wide analysis of forty-three Oryzae sativa BXs genes that form diphyletic clusters in a neighbor-joining tree. The first cluster comprised genes that encode the first four steps in BXs biosynthesis (BX2–BX4), leading to the production of 2,4-dihydroxy-2H-1,4-benzoxazin-3(4H)-one (DIBOA). The second cluster mainly comprised BX6 and BX7 genes responsible for BXs glycosylation. Furthermore, BX proteins harboring similar conserved motifs were found to group according to their phylogenetic clustering. Whereas the P450 superfamily protein is conserved in BX1-BX4 proteins, the UDP-glucosyltransferase is conserved in BX7 members. These proteins were found to be strategically localized in subcellular compartments where their catalytic activities are executed. BX1 proteins are localized in the chloroplasts, where they encode the production of indole. BX6 were identified as cytoplasmic proteins, where they are involved in the hydroxylation of DIBOA-Glycoside to 2-(2,4,7-trihydroxy-8-methoxy-1,4-benzoxazine-3-one)-β-D-glucopyranose (TRIBOA-Glycoside). Further investigation of the molecular addresses showed that BX proteins tend to localize together on chromosomes based on their functions. Moreover, the expression profiles of these proteins vary at various developmental stages in rice tissues and organs, highlighting the potential for biotic and abiotic interactions. The prospects of BXs genes in growth induction were also investigated by analyzing their responsiveness to plant hormones and nutrient treatment. BX gene expression is affected by exogenous treatment with auxin and gibberellin as well as nitrogen, potassium, and phosphorus contents, suggesting a possible role in growth mediation. This study lays the foundation for further studies to elucidate the functions of BX genes in rice.

分类号：

  • 相关文献

[1]Genome-wide identification and expression analysis of EIN3/EIL gene family in rice (Oryza sativa). Oluwaseun Olayemi Aluko,Vincent Ninkuu,James Ziemah,Yan Jianpei,Esther Taiwo,Stephen Bright Ninkuu,Noah Sabuli,Lawrence Adelani Adetunde,Abdul Wahab M. Imoro,Suleiman Fatimoh Ozavize,Queen Adaugo Onyiro,Godfred Dogee,Oluwafemi Michael Adedire,Oluwaseyi Setonji Hunpatin,Nelson Opoku. 2024

[2]Cloning and Expression of the Chloroplast Copper/Zinc-Superoxide Dismutase Gene in Upland Cotton （Gossypium hirsutum L.）. Yu Shuxun,Fan Shuli,Song Meizhen. 2007

[3]2,4-Dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) and 6-Methoxy-benzoxazolin-2-one (MBOA) Levels in the Wheat Rhizosphere and Their Effect on the Soil Microbial Community Structure. Kong, Chui-Hua,Zhang, Song-Zhu,Zheng, Yong-Quan,Li, Jing,Liu, Xing-Gang.

[4]The Asian Corn Borer Ostrinia F.urnacalis Feeding Increases The D irect And Indirect Defence Of Mid-Whorl Stage Commercial Maize In The Field. Guo, JF,Qi, JF,He, KL,Wu, JQ,Bai, SX,Zhang, TT,Zhao, JR,Wang, ZY. 2019

[5]Mythimna separata herbivory primes maize resistance in systemic leaves. ul Malook, Saif,Xu, Yuxing,Qi, Jinfeng,Li, Jing,Wang, Lei,Wu, Jianqiang. 2021

[6]Transcriptomic responses of fall armyworms (Spodoptera frugiperda) feeding on a resistant maize inbred line Xi502 with high benzoxazinoid content. Saif Ul Malook,Xiao Feng Liu,Caiyan Ma,Jinfeng Qi,Wende Liu,Shaoqun Zhou. 2021

[7]ZmPP2C45 and ZmBELL4 suppress maize biochemical defense against insect herbivores. Zhang, Shanshan,Luo, Mei,Deng, Renyu,Cai, Yanling,Qi, Jinfeng,Ma, Caiyan,Mei, Jie,Li, Wei,Liu, Wende,Wang, Guirong,Jander, Georg,Zhou, Shaoqun. 2025

[8]The Candidate Effector Cgmas2 Orchestrates Biphasic Infection of Colletotrichum graminicola in Maize by Coordinating Invasive Growth and Suppressing Host Immunity. Gong, Ziwen,Yao, Jinai,Ma, Yuqing,Xia, Xinyao,Zhang, Kai,Mei, Jie,Sun, Tongjun,Wang, Yafei,Li, Zhiqiang. 2026

[9]cis-Regulatory variation affecting gene expression contributes to the improvement of maize kernel size. Li Y.-X., Lu J., He C., Wu X., Cui Y., Chen L., Zhang J., Xie Y., An Y., Liu X., Zhen S., Liu Y., Li C., Zhang D., Shi Y.-S., Song Y., Wang J., Li Y., Wang G., Fu J., Wang T.. 2022

[10]MOLECULAR CHARACTERIZATION AND PHYLOGENETIC ANALYSIS OF UNUSUAL X-TYPE HMW GLUTENIN SUBUNITS FROM 1S(L) GENOME OF Aegilops longissima. Zhu, Gengrui,Wang, Shunli,Zhen, Shoumin,Shen, Xixi,Yan, Yueming,Wang, Shunli,Prodanovic, Slaven,Yan, Yueming. 2015

[11]Sequence analysis of four caprine mitochondria DNA lineages. Wu, Yan-Ping,Guan, Wei-Jun,Ma, Yue-Hui,Wu, Yan-Ping,Huo, Jun-Hong,Xie, Jin-Fang. 2012

[12]Identification and molecular characterization of one novel 1S(1)-encoded s-type low molecular weight glutenin B-subunit from 1S(1)(1B) substitution line of wheat variety Chinese Spring (Triticum aestivum). Deng, Xiong,Wang, Shun-li,Zhen, Shou-min,Yan, Yue-ming,Zhang, Wen-ying,Yan, Yue-ming,Wang, Shun-li.

[13]A Ser-Gly substitution in plastid-encoded photosystem II D1 protein is responsible for atrazine resistance in foxtail millet (Setaria italica). Jia, Xiaoping,Yuan, Jincheng,Shi, Yunsu,Song, Yancun,Wang, Guoying,Wang, Tianyu,Li, Yu.

[14]Short panicle1 encodes a putative PTR family transporter and determines rice panicle size. Li, Shengben,Fu, Zhiming,Zeng, Dali,Meng, Xiangbing,Zhang, Jian,Li, Jiayang,Wang, Yonghong,Li, Shengben,Fu, Zhiming,Zeng, Dali,Meng, Xiangbing,Zhang, Jian,Li, Jiayang,Wang, Yonghong,Qian, Qian,Zeng, Dali,Zhu, Xudong,Kyozuka, Junko,Maekawa, Masahiko.

[15]A novel maternal lineage revealed in sheep (Ovis aries). Guo, J,Du, LX,Ma, YH,Guan, WJ,Li, HB,Zhao, QJ,Li, X,Rao, SQ. 2005

[16]Prevalence of Theileria infections in goats and sheep in southeastern China. Yin, Hong.

[17]A case study on the genetic origin of the high oleic acid trait through FAD2-1 DNA sequence variation in safflower (Carthamus tinctorius L.). Sara Rapson,Man Wu,Shoko Okada,Alpana Das,Pushkar Shrestha,Xue-Rong Zhou,Craig Wood,Allan Green,Surinder Singh,Qing Liu. 2015

[18]Genetic diversity and phylogeny of tea plant (Camellia sinensis) and its related species and varieties in the section Thea genus Camellia determined by randomly amplified polymorphic DNA analysis. Chen, L,Yamaguchi, S.

[19]Phylogenetic analysis of Babesia species in China based on cytochrome b (COB) gene. Tian, Zhancheng,Luo, Jin,Zheng, Jinfeng,Xie, Junren,Shen, Hui,Yin, Hong,Luo, Jianxun,Tian, Meiyuan,Yuan, Xiaosong,Wang, Fangfang,Liu, Guangyuan. 2013

[20]Complete mitochondrial genome and phylogenetic analysis of eight sika deer subspecies in northeast Asia. Yimeng Dong,Yang Li,Tianjiao Wang,Huamiao Liu,Ranran Zhang,Yan Ju,Weilin Su,Hidetoshi Tamate,Xiumei Xing. 2022

作者其他论文 更多>>