数字农科院2.0

Antagonistic effects of selection on alleles associated with seed size and seed dormancy in wheat

文献类型: 外文期刊

作者: Feilong Guo1;2;3†; Changbin Yin4†; Tian Li8†; Sitong Liu1;2;3; Jiayu Dong2;4; Hao Jiang1;3; Yu Fang1;2;3; Jun Wei1;2;3; Yi Han1;2;3; Yu Li1;3;5; Hong Cao3;5; Yuting Ning9 ; Galal Khamis7;11; Xin Deng5;7; Ke Wang8 ; Jirui Wang10; Cuijun Zhang12; Fei Lu2;4;6* and Yongxiu Liu1;2;3;5*

关键词: Antagonistic effects; Genome-wide association study (GWAS); Seed dormancy; Seed size; Wheat

期刊名称: GENOME BIOLOGY

ISSN: 1474-760X

年卷期: 2025 年

页码:

收录情况: SCIE(2025版)

摘要: Abstract Background: Seed dormancy and size are two crucial traits influencing crop yield, and they have undergone strong selection during cereal domestication and improvement. However, the genetic basis underlying the antagonistic effects between seed dormancy and seed size remains poorly understood. Results: Based on genome-wide association study, we perform a comprehensive comparative analysis of 545 global wheat accessions to dissect the genetic architecture of these two traits during wheat improvement. We detect a strong negative correlation between the accumulation of favorable alleles for seed dormancy and the accumulation of favorable alleles for seed size. At the wheat genome level, a set of SNPs harboring antagonistic alleles explain up to 26.56% and 47.21% of the phenotypic variation for seed dormancy and seed size, respectively. In contrast, a set of SNPs with synergistic alleles account for only 0.54% and 1.12% of the variation in both traits. During wheat breeding improvement, favorable alleles associated with increased seed size are preferentially selected, resulting in a compromise in seed dormancy. Under different climate conditions, the frequencies of haplotypes of the pleiotropic genes with antagonistic effects and synergistic loci collectively shape wheat diversity through balancing seed dormancy and seed size. Conclusions: Our findings reveal the genetic architecture underlying the observed weakening of seed dormancy as seed size increases during wheat improvement, enabling further genome-informed cultivar breeding to balance and improve seed dormancy and seed size traits.

分类号:

  • 相关文献

[1]Synthetic Hexaploid Wheat: Yesterday, Today, A.nd Tomorrow. Li, AL, Liu, DC, Yang, WY, Kishii, M, Mao, L. 2018

[2]Antagonistic effects of selection on alleles associated with seed size and seed dormancy in wheat. Feilong Guo,Changbin Yin,Tian Li,Sitong Liu,Jiayu Dong,Hao Jiang,Yu Fang,Jun Wei,Yi Han,Yu Li,Hong Cao,Yuting Ning,Galal Khamis,Xin Deng,Ke Wang,Jirui Wang,Cuijun Zhang,Fei Lu,Yongxiu Liu. 2025

[3]Selenium distribution, translocation and speciation in wheat (Triticum aestivum L.) after foliar spraying selenite and selenate. Di X., Qin X., Zhao L., Liang X., Xu Y., Sun Y., Huang Q.. 2023

[4]A High Density Slaf-Seq Snp G.enetic Map And Qtl F or Seed Size, Oil And Protein Content In Upland Cotton. Yang, Le,Wang, Wenwen,Teng, Zhonghua,Yang, Peng,Ali, Iftikhar,Zhang, Zhengsheng,Zhang, Jian,Sun, Ying,Liu, Dexin,Liu, Dajun,Guo, Kai,Liu, Fang,Ou, Yuncan,Ma, Junrui,Liu, Tianpeng,Cai, Xiaoyan. 2019

[5]Genome-Wide Identification And Characterization Of Apetala2/Ethylene-Responsive Element Binding Factor Superfamily Genes In Soybean Seed Development. Jiang, WB, Zhang, XJ, Song, XW, Yang, JF, Pang, YZ. 2020

[6]Effect Of Seed Size On S.eedling Performance, Yield And G insenoside Content Of Panax Ginseng. Zhang, H, Xu, SQ, Pang, SF, Piao, XM, Wang, YP. 2018

[7]Eno2Affects The Seed Size And Weight By Adjusting Cytokinin Content And Forming Eno2-Bzip75 Complex Inarabidopsis Thaliana. Liu, ZJ, Zheng, LM, 普莉; Ma, XF, Wang, X, Wu, Y, Ming, HN,wangqing, Zhang, GF. 2020

[8]Down-Regulation Of Bnda1, Whose Gene L.ocus Is Associated With T he Seeds Weight, Improves The Seeds Weight And Organ Size In Brassica Napus. Wang, JL, Tang, MQ, Chen, S, Zheng, XF, Mo, HX, Li, SJ, Wang, Z, Zhu, KM, Ding, LN, Liu, SY, Li, YH, Tan, XL. 2017

[9]Small- and medium-sized seeds are more conducive to achieving high soybean yield due to the outstanding seedling survival and yield formation characteristics. 华建鑫,,,,朱玉鹏,,李瑞东,,,,吴宗声,,,,徐一帆,,,,孙石,,,,徐彩龙,,,,宋雯雯,,吴存祥. 2025

[10]A Genome-Wide Association Study Revealed Key Snps/Genes Associated With Salinity Stress Tolerance In Upland Cotton. He, Shoupu,Sun, Gaofei,Yasir, Muhammad,Geng, Xiaoli,Du, Xiongming,Pan, Zhaoe,Jia, Yinhua,Gong, Wenfang. 2019

[11]A Combined Linkage And Gwas Analysis Identifies Qtls Linked To Soybean Seed Protein And Oil Content. Sun, Shi,Yuan, Shan,Hou, Wensheng,Wu, Cunxiang,Han, Tianfu,Wang, Liwei,Wu, Tingting,Zhang, Tengfei,Jiang, Bingjun,Zhen, Caixin,Hou, Wensheng. 2019

[12]Identification Of Genes For Salt Tolerance And Yield-Related Traits In Rice Plants Grown Hydroponically And Under Saline Field Conditions By Genome-Wide Association Study. Liu, C, Chen, K, Zhao, XQ, Wang, XQ, Shen, CC, Zhu, YJ, Dai, ML, Qiu, XJ, Yang, RW, Xing, DY, Pang, YL, Xu, JL. 2019

[13]Identification Of Genetic Loci For L.eaf Hair Development In R ice Through Genome-Wide Association Study. Fang, Guo:nan,Guo, Long:biao,Gao, Zhen:yu,Qian, Qian,Qian, Qian,Ye, Guo:you,Zhang, Bin,Yang, Sheng:long,Ruan, Ban:pu,Ding, Shi:lin,Zhang, An:peng,Lin, Hai:yan,Jiang, Hong:zhen. 2019

[14]Association Mapping Of Cadmium-Tolerant Qtls I.n Brassica Napus L. A nd Insight Into Their Contributions To Phytoremediation. Zhang, FG, Xiao, X, Yan, GX, Hu, JH, Cheng, X, Li, LX, Li, HG, Wu, XM. 2018

[15]Genome-Wide Association Study Of Rice G.rain Width Variation. Zheng, XM, Gong, TT, Ou, HL, Xue, DY, Qiao, WH, Wang, JR, Liu, S, Yang, QW, Olsen, KM. 2018

[16]Identification of genes for salt tolerance and yield-related traits in rice plants grown hydroponically and under saline field conditions by genome-wide association study. 陈凯,,申聪聪,,徐建龙. 2019

[17]Identification Of Two Novel Peanut Genotypes Resistant To Aflatoxin Production And Their Snp Markers Associated With Resistance. Yu, BL, Jiang, HF, Pandey, MK, Huang, L, Huai, DX, Zhou, XJ, Kang, YP, Varshney, RK, Sudini, HK, Ren, XP, Luo, HY, Liu, N, Chen, WG, Guo, JB, Li, WT, Ding, YB, Jiang, YF, Lei, Y, Liao, BS. 2020

[18]Genome-Wide Association Analysis Dissects The Genetic Basis Of The Grain Carbon And Nitrogen Contents In Milled Rice. 张帆,梅松. 2019

[19]Identification of genetic loci for leaf hair development in rice through genome-wide association study. Hongzhen Jiang , Haiyan Lin +, Bin Zhang , Banpu Ruan , Shenglong Yang , Anpeng Zhang , Shilin Ding , Guonan Fang , Guoyou Ye , Longbiao Guo , Qian Qian , Zhenyu Gao *. 2020

[20]Genome-Wide Association Study And Linkage A.nalysis On Resistance To R ice Black-Streaked Dwarf Virus Disease. Xiao, SZ, Wang, BX, Liu, YQ, Miao, TH, Zhang, HL, Wen, PZ, He, J, Huang, J, Liu, DM, Qiu, ZY, Liu, LL, Liu, SJ, Jiang, L, Cheng, XN, Wang, CM, Xu, DY, Wan, JM. 2019

作者其他论文 更多>>
  • Spatial immune scoring system predicts hepatocellular carcinoma recurrence

    作者:Gengjie Jia1;2;3;4;12; Peiqi He1;2;3;12; Tianli Dai1;2;3;12; Denise Goh5;12; Jiabei Wang1;3; Mengyuan Sun1;2;3; Felicia Wee5 ; Fuling Li1;2;3; Jeffrey Chun Tatt Lim5 ; Shuxia Hao4 ; Yao Liu1;3; Tony Kiat Hon Lim1;6; Nye-Thane Ngo6 ; Qingping Tao1;2;3; Wei Wang1;2;3; Ahitsham Umar1;2; Björn Nashan1 ; Yongchang Zhang7 ; Chen Ding8 ; Joe Yeong5;9;10;11 ✉; Lianxin Liu1 ✉ & Cheng Sun1;2 ✉

    关键词:(1-0-4)

  • Developing high‐value‐added cotton via rebuilding astaxanthin biosynthesis pathway

    作者:Liqing Miao 1;2;†; Yameng Xu 1;3;† ; Xinyuan Zhang 2;† ; Jun Li 4 ; Suzhen Li 2; Rumei Chen 2 ; Shuya Ma 1;3; *;Xiaoqing Liu 2; * and Zuoren Yang

    关键词:0

  • Changes, interactions and drivers of soil chemical, physical and biological properties after repeated application of organic waste products in two contrasted long-term field experiments in France

    作者:Haotian Chen1;2;∗; Florent Levavasseur1; Pierre Barré3; François Baudin4;5; Sophie Sadet-Bourgeteau4; Camille Chauvin6 ; Nathalie Cheviron1;7; Christian Mougin1;7; Amicie Delahaie3; Safya Menasseri-Aubry8; Cécile Villenave6 and Sabine Houot

    关键词:soil biology; long-term field experiment; soil quality; organic wastes products

  • Identification of two novel rice S genes through combination of association and transcription analyses with gene-editing technology

    作者:Yuchen Xu1;2;† ; Lu Bai1;† ; Minghao Liu1;† ; Yanchen Liu1 ; Shasha Peng1;2 ; Pei Hu1 ; Dan Wang2 ; Qi Liu1 ; Shuangyong Yan3 ; Lijun Gao4 ; Xuli Wang1 ; Yuese Ning1 ; Shimin Zuo5 ; Wenjing Zheng6 ; Shiming Liu1 ; Wensheng Xiang1 ; Guo-Liang Wang7 and Houxiang Kang1;*

    关键词:

  • Microecological mechanism behind the alleviation of common bean root rot disease following seven continuous cropping cycles

    作者:Li Yang1;2; Adegboyega Adeniji1; Ziteng Zhou3; Gantsetseg Ganbaatar1; Xiaohong Lu1; Shidong Li1; Boming Wu2; Guangnan Zhang4; Qiwen Zhong4; Qi Wang5; Rongjun Guo1;*

    关键词:continuous cropping; rhizosphere soil; standard field fertilization; common bean root rot; soil microorganism

  • SNAC-Tag Integration into NPN Platform Facilitates Efficient Purification of Recombinant Proteins from Nicotiana benthamiana

    作者:Hui-Xin Meng1;†; Hai-Ping Diao1;†; Jin-Hao Sun2; Shi-Yu Ren1; Xue-Jiao Xu1; Yong-Feng Guo1; Shi-Jian Song1;2; *

    关键词:Plant molecular farming; Nicotiana benthamiana; SNAC-tag; Protein purification; Trimeric Proteins.

  • Harnessing Landrace Diversity Empowers Wheat Breeding(副)

    作者:Shifeng Cheng1 ;#;* ; Cong Feng1;*; Luzie U. Wingen2;*; Hong Cheng1 ; Andrew B. Riche3 ; Mei Jiang1 ; Michelle Leverington-Waite2 ; Zejian Huang1 ; Sarah Collier2 ; Simon Orford2 ; Xiaoming Wang2;4; Rajani Awal2 ; Gary Barker5 ; Tom O’’Hara2 ; Clare Lister2 ; Ajay Siluveru2 ; Jesús Quiroz-Chávez2 ; Ricardo H. Ramírez-González2 ; Ruth Bryant6 ; Simon Berry7 ; Urmil Bansal8 ; Harbans S. Bariana8;9; Malcolm J. Bennett10; Breno Bicego11; Lorelei Bilham2 ; James K.M. Brown2 ; Amanda Burridge5 ; Chris Burt6 ; Milika Buurman12; March Castle3 ; Laetitia Chartrain2 ; Baizhi Chen1 ; Worku Denbel13; Ahmed F. Elkot14; Paul Fenwick15; David Feuerhelm16; John Foulkes10; Oorbessy Gaju10; Adam Gauley17;18; Kumar Gaurav2 ; Amber N. Hafeez2 ; Ruirui Han1;19; Richard Horler2 ; Junliang Hou1 ; Muhammad S. Iqbal1 ; Matthew Kerton20; Ankica Kondic-Spica21; Ania Kowalski2 ; Jacob Lage22; Xiaolong Li23; Hongbing Liu1 ; Shiyan Liu1 ; Alison Lovegrove3 ; Lingling Ma1 ; Cathy Mumford2 ; Saroj Parmar3 ; Charlie Philp2 ; Darryl Playford2 ; Alexandra M. Przewieslik-Allen5 ; Zareen Sarfraz1 ; David Schafer6 ; Peter R. Shewry3 ; Yan Shi1 ; Gustavo Slafer11; Baoxing Song24; Bo Song1 ; David Steele3 ; Burkhard Steuernagel2 ; Phillip Tailby7 ; Simon Tyrrell25; Abdul Waheed1 ; Mercy N. Wamalwa26; Xingwei Wang1 ; Yanping Wei1 ; Mark Winfield5 ; Shishi Wu1 ; Yubing Wu1;27; Brande B.H. Wulff2;28; Wenfei Xian1;29; Yawen Xu1;27; Yunfeng Xu1 ; Quan Yuan1 ; Xin Zhang1;27; Keith J. Edwards5 ; Laura Dixon17; Paul Nicholson2 ; Noam Chayut2 ; Malcolm J. Hawkesford3 ; Cristobal Uauy2 ; Dale Sanders2 ; Sanwen Huang1;30; Simon Griffiths2 ;#

    关键词:(1-0-1)