数字农科院2.0

High-quality whole genome data of Cephonodes sanshaensis

文献类型: 外文期刊

作者: Chao Tang;Ye song Ren;Zhi Gong;Bo Liu;Guang chang Ma;Fang hao Wan

作者机构:

关键词: (2-1-2)de novo assembly;Genome sequencing;Lepidoptera;PacBio HiFi sequencing;Repetitive elements

期刊名称: Data in Brief

ISSN: 2352-3409

年卷期: 2025 年 62 卷

页码:

收录情况: EI(2025版) ; ; ESCI(2025版)

摘要: A high-quality whole genome assembly of Cephonodes sanshaensis (Lepidoptera: Sphingidae) was generated using PacBio HiFi sequencing technology. The assembly, constructed with hifiasm and refined by redundant sequences using Purge_dups, resulted in a genome size of 384.76 Mb with a contig N50 of 14.22 Mb. Genome annotation was performed by integrating transcriptome data, homology-based prediction, and de novo gene prediction methods. The final dataset includes the assembled genome sequence and a comprehensive set of predicted protein-coding genes. This genome assembly has been deposited in the China National GeneBank DataBase (CNGBdb) under accession number CNA0505688. The raw sequencing reads are available at CNGB Sequence Archive under accession number CNP0007405. This genomic resource lays a foundation for comparative studies within Sphingidae and Lepidoptera, as well as for exploring genome architecture and sequence evolution.

分类号:

  • 相关文献

[1]High-quality whole genome data of Hippotion velox. ChaoTang,Yuan tong Zhang,Bo Liu,Guang chang Ma,Wan qiang Qian,Zhi Gong. 2025

[2]Improved microbial genomes and gene catalog of the chicken gut from metagenomic sequencing of high-fidelity long reads. Yan Zhang,Fan Jiang,Boyuan Yang,Sen Wang,Hengchao Wang,Anqi Wang,Dong Xu,Wei Fan. 2022

[3]Improved chromosome-level genome and annotation data for a leafy vegetable water spinach (Ipomoea aquatica). Fan Jiang,Sen Wang,Hengchao Wang,Dong Xu,Anqi Wang,Lihua Yuan,Wei Fan. 2023

[4]Fast Construction Of A Reference G.enome: Challenges And Opportunities U sing 'Royal Gala' Apple As A Case Study. Cong, P.,Chagne, D.,Deng, C. H.,Zhang, C.,Bus, V.,Yao, J. -L.,Sullivan, S.,Tian, Y.,Liachko, I.,Gardiner, S. E.,Gleave, A.. 2018

[5]Recent Insights Into Cotton Functional G.enomics: Progress And Future P erspectives. Malik, Waqas,Song, Guoli,Wang, Qiaolian,Yang, Qiuhong,Zuo, Dongyun,Zhang, Youping,Cheng, Hailiang,Abid, Muhammad Ali,Ashraf, Javaria. 2018

[6]Rhizobium oryziradicis sp nov., isolated from rice roots. Zhao, Juan-Juan,Zhang, Jun,Zhang, Rui-Jie,Zhang, Cai-Wen,Zhang, Xiao-Xia,Sun, Lei,Yin, Hua-Qun.

[7]Isolation and pathogenicity of the mammalian orthoreovirus MPC/04 from masked civet cats. Li, Zhijie,Shao, Yuhao,Liu, Chunguo,Liu, Dafei,Guo, Dongchun,Qiu, Zheng,Tian, Jin,Zhang, Xiaozhan,Liu, Shengwang,Qu, Liandong. 2015

[8]Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Elmerich, Claudine,Yan, Yongliang,Dou, Yuetan,Chen, Ming,Ping, Shuzhen,Lu, Wei,Zhang, Wei,Yao, Ziying,Li, Hongquan,Liu, Wei,He, Sheng,Geng, Lizhao,Yu, Haiying,Zhan, Yuhua,Li, Danhua,Lin, Min,Yan, Yongliang,Yang, Jian,Peng, Junping,Zhang, Xiaobing,Yang, Fan,Jin, Qi,Dou, Yuetan,Yu, Haiying,Zhan, Yuhua,Li, Danhua,Ping, Shuzhen,He, Sheng,Lin, Min,Lin, Zhanglin,Wang, Yiping.

[9]Characterization and pathogenicity of a novel mammalian orthoreovirus from wild short-nosed fruit bats. Li, Zhijie,Liu, Dafei,Ran, Xuhua,Liu, Chunguo,Guo, Dongchun,Hu, Xiaoliang,Tian, Jin,Zhang, Xiaozhan,Shao, Yuhao,Liu, Shengwang,Qu, Liandong.

[10]Transposon insertions regulate genome-wide allele-specific expression and underpin flower colour variations in apple (Malus spp.). Tian, Yi,Thrimawithana, Amali,Ding, Tiyu,Guo, Jian,Gleave, Andrew,Chagne, David,Ampomah-Dwamena, Charles,Ireland, Hilary S.,Schaffer, Robert J.,Luo, Zhiwei,Wang, Meili,An, Xiuhong,Wang, Dajiang,Gao, Yuan,Wang, Kun,Zhang, Hengtao,Zhang, Ruiping,Zhou, Zhe,Yan, Zhenli,Zhang, Liyi,Zhang, Caixia,Cong, Peihua,Deng, Cecilia H.,Yao, Jia-Long. 2022

[11]The whole genomic analysis of the Orf virus strains ORFV-SC and ORFV-SC1 from the Sichuan province and their weak pathological response in rabbits. Guoyu Du,Jinyan Wu,Cheng Zhang,Xiaoan Cao,Lingxia Li,Jijun He,Yong Zhang,Youjun Shang. 2023

[12]Insights Into Xylan Degradation And H.aloalkaline Adaptation Through Whole-Genome A nalysis Of Alkalitalea Saponilacus, An Anaerobic Haloalkaliphilic Bacterium Capable Of Secreting Novel Halostable Xylanase. Liao, ZY, Holtzapple, M, Yan, YC, SWang, HS, Li, J, Zhao, BS. 2019

[13]Genome sequence of the asian honeybee in pakistan sheds light on its phylogenetic relationship with other honeybees. Hongwei Tan,Muhammad Naeem,Hussain Ali,Muhammad Shakeel,Haiou Kuang,Ze Zhang,Cheng Sun. 2021

[14]Recent insights into cotton functional genomics: progress and future perspectives. 宋国立. 2018

[15]Arthrobacter wenxiniae sp. nov., a novel plant growth-promoting rhizobacteria species harbouring a carotenoids biosynthetic gene cluster. Sun, Yu-chen,Sun, Pengbo,Xue, Jing,Du, Yunpeng,Yan, Hui,Wang, Li-wei,Yi, Xin-xin,Sun, Jian-guang,Zhang, Xiuhai,Gao, Jun-lian. 2021

[16]The Chromosome-Level Assembly of Ramie (Boehmeria Nivea L.) Genome Provides Insights into Molecular Regulation of Fiber Fineness. Kunmei Chen,Yao Ming,Mingbao Luan,Ping Chen,Junhui Chen,Heping Xiong,Jikang Chen,Bin Wu,Mingzhou Bai,Gang Gao,Qianqian Zhang,Xiaofei Wang,Jianbo Jian,Chunming Yu,Aiguo Zhu. 2023

[17]Weed genomics: yielding insights into the genetics of weedy traits for crop improvement. Huang, Yujie,Wu, Dongya,Huang, Zhaofeng,Li, Xiangyu,Merotto, Aldo,Bai, Lianyang,Fan, Longjiang. 2023

[18]A Novel and Efficient Phthalate Hydrolase from Acinetobacter sp. LUNF3: Molecular Cloning, Characterization and Catalytic Mechanism. Shuanghu Fan,Jingjing Guo,Shaoyan Han,Haina Du,Zimeng Wang,Yajuan Fu,Hui Han,Xiaoqiang Hou,Weixuan Wang. 2023

[19]Biodegradation of phthalic acid esters (PAEs) by Bacillus sp. LUNF1 and characterization of a novel hydrolase capable of catalyzing PAEs. Shuanghu Fan,Congsheng Li,Jingjing Guo,Anders Johansen,Yuanwang Liu,Yao Feng,Jianming Xue,Zhaojun Li. 2023

[20]Effect of volatile compounds produced by Weissella cibaria BWL4 on Botrytis cinerea infection in fruit and complete genome sequence analysis of BWL4. Danfeng Zhang,Xuehua Xu,Xinrui Tian,Rui Wang,Tingting Hu,Wei Shi,Wanling Bi,Yingwang Ye. 2024

作者其他论文 更多>>