数字农科院2.0

Whole Metagenome Sequencing Of Cecum Microbiomes In Ethiopian Indigenous Chickens From Two Different Altitudes Reveals Antibiotic Resistance Genes

文献类型: 外文期刊

作者: Kumar, H; Park, W; Lim, D; Srikanth, K; Kim, JM; Jia, XZ; Han, JL; Hanotte, O; Park, JE; Oyola, SO

作者机构:

关键词: Indigenous Chicken; Microbiome; Lefse; Kegg; Eggnog; Cazy; Antibiotic Resistant Gene

期刊名称: GENOMICS

ISSN: 0888-7543

年卷期: 2020 年 112 卷 2 期

页码:

收录情况: JCR(2021版)

摘要: We analyzed the whole genomes of cecum microbiomes of Ethiopian indigenous chickens from two distinct geographical zones: Afar (AF) district (Dulecha, 730 m above sea level) and Amhara (AM) district (Menz Gera Midir, 3300 m). Through metagenomic analysis we found that microbial populations were mainly dominated by Bacteroidetes and Firmicutes. We identified 2210 common genes in the two groups. LEfSe showed that the distribution of Coprobacter, Geobacter, Cronobacter, Alloprevotella, and Dysgonomonas were more abundant in AF than AM. Analyses using KEGG, eggNOG, and CAZy databases indicated that the pathways of metabolism, genetic information processing, environmental information processing, and cellular process were significantly enriched. Functional abundance was found to be associated with the nutrient absorption and microbial localization of indigenous chickens. We also investigated antibiotic resistant genes and found antibiotics like LSM, cephalosporin, and tetracycline were significantly more abundant in AF than AM.

分类号:

  • 相关文献

[1]Genomic, Transcriptomic And Enzymatic Insight Into Lignocellulolytic System Of A Plant Pathogen Dickeya Sp. Ws52 To Digest Sweet Pepper And Tomato Stalk. Yang, YJ, Lin, W, Singh, RP, Xu, Q, Chen, ZH, Yuan, Y, Zou, P, Li, YQ, Zhang, CS. 2019

[2]Proteome Analysis Of Egg Yolk A.fter Exposure To Zinc O xide Nanoparticles. Zhang, PF, Zhao, Y, Yu, S, Liu, J, Hao, YN, Zhang, HF, Ge, W, Min, LJ, Shen, W, Li, QJ, Kou, X, Ma, HF, Li, L. 2017

[3]Identification Of Salinity-Related Genes In E.no2 Mutant (Eno2(-)) Of A rabidopsis Thaliana. Zhang, YH, Chen, C, Shi, ZH, Cheng, HM, Bing, J, Ma, XF, Zheng, CX, Li, HJ, Zhang, GF. 2018

[4]Comparative Effect Of Black, Green, O.olong, And White Tea I ntake On Weight Gain And Bile Acid Metabolism. Xu, Hairong,Gaikwad, Nilesh W.,Ye, Jianhui,Sun, Lili. 2019

[5]Lysine Restriction Affects Feed Intake A.nd Amino Acid Metabolism V ia Gut Microbiome In Piglets. Yin, J, Han, H, Li, YY, Liu, ZJ, Zhao, YR, Fang, RJ, Huang, XG, Zheng, J, Ren, WK, Wu, F, Liu, G, Wu, X, Wang, K, Sun, LP, Li, CY, Li, TJ, Yin, YL. 2017

[6]Integrated Meta-Omits Approaches To Understand The Microbiome Of Spontaneous Fermentation Of Traditional Chinese Pu-Erh Tea. Zhao, M, Su, XQ, Nian, B, Chen, LJ, Zhang, DL, Duan, SM, Wang, LY, Shi, XY, Jiang, B, Jiang, WW, Lv, CY, Wang, DP, Shi, Y, Xiao, Y, Wu, JL, Pan, YH, Ma, Y. 2019

[7]Mycokey Round Table Discussions Of F.uture Directions In Research O n Chemical Detection Methods, Genetics And Biodiversity Of Mycotoxins. Leslie, JF, Lattanzio, V, Audenaert, K, Battilani, P, Cary, J, Chulze, SN, De Saeger, S, Gerardino, A, Karlovsky, P, Liao, YC, Maragos, CM, Meca, G, Medina, A, Moretti, A, Munkvold, G, Mule, G, Njobeh, P, Pecorelli, I, Perrone, G, Pietri, A, Palazzini, JM, Proctor, RH, Rahayu, ES, Ramirez, ML, Samson, R, Stroka, J, Sulyok, M, Sumarah, M, Waalwijk, C, Zhang, Q, Zhang, H, Logrieco, AF. 2018

[8]Spatial Heterogeneity And Co-Occurrence Of M.ucosal And Luminal Microbiome A cross Swine Intestinal Tract. Zhang, L, Wu, WD, Lee, YK, Xie, JJ, Zhang, HF. 2018

[9]The Chicken Gut Metagenome And T.he Modulatory Effects Of P lant-Derived Benzylisoquinoline Alkaloids. Zhang, Yan,Huang, Peng,Huang, Peng,Zeng, Jianguo,Liu, Hua,Liu, Dan,Lin, Qian,Liu, Xiubin,Liu, Yisong,Lin, Li,Zeng, Cheng,Yin, Lijuan,Zeng, Cheng,Zeng, Jianguo,Huang, Jialu,Huang, Sanwen,Jiang, Fan,Yun, Long,Yuan, Jingyang,Fan, Wei,Lin, Li,Huang, Jialu,Cao, Hualiang,Cao, Hualiang,He, Xi,Guo, Yuming,Hu, Nanxi,Hu, Nanxi,Su, Xiaogang,Liu, Yisong,Wang, Hengchao,Liu, Bo,Liu, Conghui,Xiao, Kangpeng,Qing, Zhixing,Ren, Yuwei,Xiao, Kangpeng,Tang, Dazhi. 2018

[10]Reduced Feeding Frequency Improves Feed Efficiency Associated With Altered Fecal Microbiota and Bile Acid Composition in Pigs. Yan H.,Wei W.,Hu L.,Zhang Y.,Zhang H.,Liu J.. 2021

[11]Exploring Biocontrol Agents From Microbial Keystone Taxa Associated to Suppressive Soil: A New Attempt for a Biocontrol Strategy. Zheng Yanfen,Han Xiaobin,Zhao Donglin,Wei Keke,Yuan Yuan,Li Yiqiang,Liu Minghong,Zhang Cheng-Sheng. 2021

[12]Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen. Mohammad Farhad Vahidi,Javad Gharechahi,Mehrdad Behmanesh,Xue-Zhi Ding,Jian-Lin Han,Ghasem Hosseini Salekdeh. 2021

[13]Contribution of phenoloxidase activation mechanism to Bt insecticidal protein resistance in Asian corn borer. Prabu, Sivaprasath,Yuan, Weining,Jing, Dapeng,Shabbir, Muhammad Zeeshan,Wang, Zhenying,He, Kanglai. 2020

[14]In Vitro Fermentation Of Arabinoxylan F.rom Oat (Avena Sativa L .) By Pekin Duck Intestinal Microbiota. Tian, DD, Xu, XQ, Peng, Q, Wen, ZG, Zhang, YW, Wei, CY, Qiao, Y, Shi, B. 2019

[15]Soil Microbial Mechanisms Promoting Ultrahigh Rice Yield. Zhong, YQW, Hu, JH, Xia, QM, Zhang, SL, Li, X, Pan, XY, Zhao, RP, Wang, RW, Yan, WM, Shangguan, ZP, Hu, FY, Yang, CD, Wang, W. 2020

[16]Roots and microbiome jointly drive the distributions of 17 phytohormones in the plant soil continuum in a phytohormone‐specific manner. Yuqiu Lu,Enzhao Wang,Zhiyu Tang,Junpeng Rui,Yanling Li,Zhixi Tang,Weiling Dong,Xiongduo Liu,Timothy S. George,Alin Song,Fenliang Fan. 2021

[17]Dietary Regulation of the Crosstalk between Gut Microbiome and Immune Response in Inflammatory Bowel Disease. Qianqian Yao,Huiying Li,Linlin Fan,Yangdong Zhang,Shengguo Zhao,Nan Zheng,Jiaqi Wang. 2021

[18]Prediction and analysis of metagenomic operons via MetaRon: a pipeline for prediction of Metagenome and whole-genome opeRons. Syed Shujaat Ali Zaidi,Masood Ur Rehman Kayani,Xuegong Zhang,Younan Ouyang,Imran Haider Shamsi. 2021

[19]Integrated Microbiome and Metabolome Analysis Reveals a Positive Change in the Intestinal Environment of Myostatin Edited Large White Pigs. Yangli Pei,Chujie Chen,Yulian Mu,Yalan Yang,Zheng Feng,Bugao Li,Hua Li,Kui Li. 2021

[20]Chinese Propolis Prevents Obesity And Metabolism Syndromes Induced By A High Fat Diet And Accompanied By An Altered Gut Microbiota Structure In Mice. Zheng, YF, Wu, YQ, Tao, LC, Chen, X, Jones, TJ, Wang, K, Hu, FL. 2020

作者其他论文 更多>>