数字农科院2.0

Genome-wide identification, classification and expression analysis of genes encoding putative fasciclin-like arabinogalactan proteins in Chinese cabbage (Brassica rapa L.)

文献类型： 外文期刊

作者： Li Jun;Wu Xiaoming

作者机构：

关键词： Arabinogalactan proteins;Fasciclin-like domain;Expression analysis;Genome;Brassica rapa

期刊名称： MOLECULAR BIOLOGY REPORTS

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Fasciclin-like arabinogalactan proteins (FLAs), a subclass of arabinogalactan proteins (AGPs), have both predicted AGP-like glycosylated regions and putative fasciclin (FAS) domains, which may function in cell adhesion and communication. Previous studies have identified 21, 27, and 34 FLAs in Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), and wheat (Triticum aestivum), respectively. In this study, we identified 33 FLAs in the annotated genome of Chinese cabbage (Brassica rapa ssp. pekinensis line Chiifu-401-42). Sequence analysis indicated that FAS domains each contain two highly conserved regions, named H1 and H2, and that 17 FLAs from B. rapa (BrFLAs) possess both of these regions. Prediction of glycosylphosphatidylinositol (GPI) modification sites suggested that 15 BrFLAs were GPI-anchored to the plasma membrane. Additionally, 25 BrFLAs may have been duplicated during the processes that shaped the triplicated genome of the mesopolyploid B. rapa. Expression analyses indicated that BrFLA1, BrFLA11, BrFLA13, BrFLA28 and BrFLA32 were specifically expressed in inflorescence. Meanwhile, BrFLA9 (homologous to AtFLA12) is specifically expressed in stem, and BrFLA6/22 (homologous to AtFLA11) is also highly expressed in stem, suggesting BrFLA6/9/22 may have the same functions as AtFLA11/12 in A. thaliana. Taken together, the identification and bioinformatic analysis of FLAs in B. rapa will open the way for studying their biological functions in plant growth and development as well as evolutionary history of this gene family from A. thaliana to B. rapa.

分类号： Q7

  • 相关文献

[1]The putative phytocyanin genes in Chinese cabbage (Brassica rapa L.): genome-wide identification, classification and expression analysis. Li, Jun,Gao, Guizhen,Zhang, Tianyao,Wu, Xiaoming.

[2]Carotenoid biosynthetic genes in Brassica rapa: comparative genomic analysis, phylogenetic analysis, and expression profiling. Li, Peirong,Zhang, Shujiang,Zhang, Shifan,Li, Fei,Zhang, Hui,Cheng, Feng,Wu, Jian,Wang, Xiaowu,Sun, Rifei. 2015

[3]Genome-Wide Identification and Expression Analysis of eIF Family Genes from Brassica rapa in Response to TuMV Resistance. Huang, Wenyue,Wang, Shaoxing,Zhang, Shifan,Li, Fei,Zhang, Hui,Sun, Rifei,Zhang, Shujiang,Li, Guoliang. 2022

[4]四种甘蓝雄性不育类型基因芯片表达谱分析. 康俊根,王晓武,方智远. 2007

[5]Effects of inter-culture, arabinogalactan proteins, and hydrogen peroxide on the plant regeneration of wheat immature embryos. Zhang Wei,Wang Xin-min,Yin Gui-xiang,Wang Ke,Du Li-pu,Xiao Le-le,Ye Xing-guo,Fan Rong. 2015

[6]BRITTLE PLANT1 is required for normal cell wall composition and mechanical strength in rice. Zhang Y.,Wang Y.,Wang C.,Rautengarten C.,Duan E.,Zhu J.,Zhu X.,Lei J.,Peng C.,Wang Y.,Teng X.,Tian Y.,Liu X.,Heazlewood J.L.,Wu A.,Wan J.. 2021

[7]Production and characterization of intertribal somatic hybrids of Raphanus sativus and Brassica rapa with dye and medicinal plant Isatis indigotica. Tu, Yuqin,Sun, Jian,Liu, Yan,Ge, Xianhong,Zhao, Zhigang,Yao, Xingcheng,Li, Zaiyun,Sun, Jian. 2008

[8]Regulation of bolting and identification of the alpha-tubulin gene family in Brassica rapa L. ssp pekinensis. Zhang, Y. W.,Jin, D.,Xu, C.,Zhang, L.,Guo, M. H.,Zhang, Y. W.,Fang, Z. Y.. 2016

[9]Development of gene-based markers for the Turnip mosaic virus resistance gene retr02 in Brassica rapa. Li, Guo-Liang,Qian, Wei,Zhang, Shu-Jiang,Zhang, Shi-Fan,Li, Fei,Zhang, Hui,Wu, Jian,Wang, Xiao-Wu,Sun, Ri-Fei.

[10]Chromosome elimination, addition and introgression in intertribal partial hybrids between Brassica rapa and Isatis indigotica. Tu, Yuqin,Sun, Jian,Ge, Xianhong,Li, Zaiyun,Sun, Jian.

[11]Design of a Brassica rapa core collection for association mapping studies. Zhao, Jianjun,Del Carpio, Dunia Pino,Basnet, Ram Kumar,Zhang, Ningwen,Li, Fei,Bucher, Johan,Visser, Richard G. F.,Bonnema, Guusje,Zhao, Jianjun,Artemyeva, Anna,Gao, Jie,Li, Fei,Wang, Xiaowu.

[12]IDENTITIES AND RELATIONSHIPS AMONG CHINESE VEGETABLE BRASSICAS AS DETERMINED BY RANDOM AMPLIFIED POLYMORPHIC DNA MARKERS. REN, JP,MCFERSON, JR,LI, RG,KRESOVICH, S,LAMBOY, WF.

[13]Genetic Diversity of European and Chinese Oilseed Brassica rapa Cultivars from Different Breeding Periods. Zhao Yong-guo,Lu Chang-ming,Zhao Yong-guo,Zhao Yong-guo,Atta, Ofori. 2009

[14]Three genes encoding AOP2, a protein involved in aliphatic glucosinolate biosynthesis, are differentially expressed in Brassica rapa. Zhang, Jifang,Liu, Zhiyuan,Liang, Jianli,Wu, Jian,Cheng, Feng,Wang, Xiaowu.

[15]Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa. Cheng, Feng,Sun, Chao,Wu, Jian,Liang, Jianli,Cai, Chengcheng,Wang, Xiaowu,Schnable, James,Woodhouse, Margaret R.,Freeling, Michael.

[16]Anthocyanin profile characterization and quantitative trait locus mapping in zicaitai (Brassica rapa L. ssp chinensis var. purpurea). Guo, Ning,Wu, Jian,Zheng, Shuning,Cheng, Feng,Liu, Bo,Liang, Jianli,Cui, Yang,Wang, Xiaowu.

[17]The Brassica rapa FLC homologue FLC2 is a key regulator of flowering time, identified through transcriptional co-expression networks. Xiao, Dong,Zhao, Jian J.,Basnet, Ram K.,Zhang, Ning W.,Bucher, Johan,Lin, Ke,Bonnema, Guusje,Xiao, Dong,Hou, Xi L.,Zhao, Jian J.,Basnet, Ram K.,Bonnema, Guusje,Carpio, Dunia P. D.,Cheng, Feng,Wang, Xiao W.,Bonnema, Guusje. 2013

[18]Expression profiling reveals functionally redundant multiple-copy genes related to zinc, iron and cadmium responses in Brassica rapa. Li, Jimeng,Liu, Bo,Cheng, Feng,Wang, Xiaowu,Wu, Jian,Li, Jimeng,Aarts, Mark G. M..

[19]Characterization of FAE1 in the zero erucic acid germplasm of Brassica rapa L.. Yan, Guixin,Li, Dan,Cai, Mengxian,Gao, Guizhen,Chen, Biyun,Xu, Kun,Li, Jun,Li, Feng,Wang, Nian,Qiao, Jiangwei,Li, Hao,Zhang, Tianyao,Wu, Xiaoming.

[20]Multiple copies of eukaryotic translation initiation factors in Brassica rapa facilitate redundancy, enabling diversification through variation in splicing and broad-spectrum virus resistance. Nellist, Charlotte F.,Jenner, Carol E.,Moore, Jonathan D.,Barker, Guy C.,Walsh, John A.,Qian, Wei,Zhang, Shujiang,Wang, Xiaowu,Sun, Rifei,Briggs, William H.. 2014

作者其他论文 更多>>